Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6497 | 5' | -57.3 | NC_001847.1 | + | 60752 | 0.69 | 0.648858 |
Target: 5'- gCGCGGCGGC-CGcGCGGUCCCc----- -3' miRNA: 3'- -GCGUCGUCGaGC-UGCCAGGGcaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 66882 | 0.68 | 0.709879 |
Target: 5'- uCGCGcGCGGguaCUCGuCGGUCCCGgUGUu -3' miRNA: 3'- -GCGU-CGUC---GAGCuGCCAGGGCaACAu -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 71872 | 0.69 | 0.679546 |
Target: 5'- aGCGGCcGCgagCGcGCGG-CCCGUUGUu -3' miRNA: 3'- gCGUCGuCGa--GC-UGCCaGGGCAACAu -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 72324 | 0.67 | 0.768499 |
Target: 5'- uGCGGCAGCUgcgCGAcuCGG-CCCGgcUUGUGc -3' miRNA: 3'- gCGUCGUCGA---GCU--GCCaGGGC--AACAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 78045 | 0.71 | 0.526961 |
Target: 5'- gCGCGGCGGCgCGGCGGUCCa------ -3' miRNA: 3'- -GCGUCGUCGaGCUGCCAGGgcaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 78204 | 0.66 | 0.822725 |
Target: 5'- uCGCGGCGGCU--GCGGUgcaCCGUcGUGu -3' miRNA: 3'- -GCGUCGUCGAgcUGCCAg--GGCAaCAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 79903 | 0.66 | 0.822725 |
Target: 5'- aCGCAGCAGCggGACGcGUCCgcaGUg--- -3' miRNA: 3'- -GCGUCGUCGagCUGC-CAGGg--CAacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 80779 | 0.78 | 0.228221 |
Target: 5'- cCGCAGCAGCUCGcgcaGCGcGUCCuCGUUGc- -3' miRNA: 3'- -GCGUCGUCGAGC----UGC-CAGG-GCAACau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 85272 | 0.69 | 0.669344 |
Target: 5'- uGCAGCAGCUCGcagaguGCGG---CGUUGUAg -3' miRNA: 3'- gCGUCGUCGAGC------UGCCaggGCAACAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 88264 | 0.68 | 0.71987 |
Target: 5'- aGCGGC-GCUCGcACGcGUCCCGg---- -3' miRNA: 3'- gCGUCGuCGAGC-UGC-CAGGGCaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 88880 | 0.73 | 0.423396 |
Target: 5'- gCGCGGCGGCggCGGCGGcUCCCGc---- -3' miRNA: 3'- -GCGUCGUCGa-GCUGCC-AGGGCaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 91732 | 0.68 | 0.689708 |
Target: 5'- aGCAGCAGCgCGA-GGUCCgCGUa--- -3' miRNA: 3'- gCGUCGUCGaGCUgCCAGG-GCAacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 93759 | 0.66 | 0.839494 |
Target: 5'- gCGCGGCuGCcggCGGCGG-CCCGg---- -3' miRNA: 3'- -GCGUCGuCGa--GCUGCCaGGGCaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 96860 | 0.73 | 0.450481 |
Target: 5'- gGCGGCGGUgggCGGCGGUCCgCGcUGg- -3' miRNA: 3'- gCGUCGUCGa--GCUGCCAGG-GCaACau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 97441 | 0.66 | 0.839494 |
Target: 5'- aGCAGCAGCgcgcacgUGACgaGGUCCagcgCGUUGa- -3' miRNA: 3'- gCGUCGUCGa------GCUG--CCAGG----GCAACau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 100584 | 0.69 | 0.648858 |
Target: 5'- gGCGuGCAGCUUGGCGG-CCUGUg--- -3' miRNA: 3'- gCGU-CGUCGAGCUGCCaGGGCAacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 104290 | 0.66 | 0.831201 |
Target: 5'- cCGCGGCAGagccgcagCGGCGGcgCCuCGggGUAg -3' miRNA: 3'- -GCGUCGUCga------GCUGCCa-GG-GCaaCAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 104541 | 0.67 | 0.778827 |
Target: 5'- gCGCGGCGGCcccggggccgcuacgCGGCGGUCCUccUGg- -3' miRNA: 3'- -GCGUCGUCGa--------------GCUGCCAGGGcaACau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 105769 | 0.71 | 0.546869 |
Target: 5'- gCGCGGCAGCUCcggccgcccGCGGUCgCCGcUGUu -3' miRNA: 3'- -GCGUCGUCGAGc--------UGCCAG-GGCaACAu -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 105845 | 0.75 | 0.33301 |
Target: 5'- gCGCcgAGCAGCUCGGCGG-CCCGg---- -3' miRNA: 3'- -GCG--UCGUCGAGCUGCCaGGGCaacau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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