miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 5' -57.3 NC_001847.1 + 71872 0.69 0.679546
Target:  5'- aGCGGCcGCgagCGcGCGG-CCCGUUGUu -3'
miRNA:   3'- gCGUCGuCGa--GC-UGCCaGGGCAACAu -5'
6497 5' -57.3 NC_001847.1 + 14421 0.69 0.679546
Target:  5'- uCGCAGCGGgucgcgacugcCUCGACGG-CgCCGggGUGc -3'
miRNA:   3'- -GCGUCGUC-----------GAGCUGCCaG-GGCaaCAU- -5'
6497 5' -57.3 NC_001847.1 + 91732 0.68 0.689708
Target:  5'- aGCAGCAGCgCGA-GGUCCgCGUa--- -3'
miRNA:   3'- gCGUCGUCGaGCUgCCAGG-GCAacau -5'
6497 5' -57.3 NC_001847.1 + 66882 0.68 0.709879
Target:  5'- uCGCGcGCGGguaCUCGuCGGUCCCGgUGUu -3'
miRNA:   3'- -GCGU-CGUC---GAGCuGCCAGGGCaACAu -5'
6497 5' -57.3 NC_001847.1 + 88264 0.68 0.71987
Target:  5'- aGCGGC-GCUCGcACGcGUCCCGg---- -3'
miRNA:   3'- gCGUCGuCGAGC-UGC-CAGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 125473 0.68 0.71987
Target:  5'- gGCGGCAGCUCGcgGCGGgcgcgaggacgCCCGg---- -3'
miRNA:   3'- gCGUCGUCGAGC--UGCCa----------GGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 47716 0.67 0.74838
Target:  5'- gCGCAGCAGCUCuucgagcgcggcgGGCGGggcCCCGc---- -3'
miRNA:   3'- -GCGUCGUCGAG-------------CUGCCa--GGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 52918 0.67 0.749349
Target:  5'- gGCAGCGGCUCGG-GGcgCCCGc---- -3'
miRNA:   3'- gCGUCGUCGAGCUgCCa-GGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 132300 0.67 0.749349
Target:  5'- uCGCAGCGGCaUGGCGGacCCCGa---- -3'
miRNA:   3'- -GCGUCGUCGaGCUGCCa-GGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 72324 0.67 0.768499
Target:  5'- uGCGGCAGCUgcgCGAcuCGG-CCCGgcUUGUGc -3'
miRNA:   3'- gCGUCGUCGA---GCU--GCCaGGGC--AACAU- -5'
6497 5' -57.3 NC_001847.1 + 42386 0.67 0.777895
Target:  5'- uGCAGCGGCUgcaCGGCgaGGUCCUGg---- -3'
miRNA:   3'- gCGUCGUCGA---GCUG--CCAGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 104541 0.67 0.778827
Target:  5'- gCGCGGCGGCcccggggccgcuacgCGGCGGUCCUccUGg- -3'
miRNA:   3'- -GCGUCGUCGa--------------GCUGCCAGGGcaACau -5'
6497 5' -57.3 NC_001847.1 + 129109 0.67 0.781617
Target:  5'- gCGCAGUuuaacguccaaAGCUacaucgaacagaacgUGGCGGUCgCCGUUGUu -3'
miRNA:   3'- -GCGUCG-----------UCGA---------------GCUGCCAG-GGCAACAu -5'
6497 5' -57.3 NC_001847.1 + 127352 0.67 0.787159
Target:  5'- cCGCGGCAGgggCGGCGGggCCCGa---- -3'
miRNA:   3'- -GCGUCGUCga-GCUGCCa-GGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 134244 0.67 0.796283
Target:  5'- gGCGGCGGCcggcggccgCGGCGGcCCCGg---- -3'
miRNA:   3'- gCGUCGUCGa--------GCUGCCaGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 31431 0.67 0.796283
Target:  5'- gGCGGCGGCcggcggccgCGGCGGcCCCGg---- -3'
miRNA:   3'- gCGUCGUCGa--------GCUGCCaGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 134041 0.66 0.814075
Target:  5'- cCGCGGCGGCgccgcccgCGgccGCGGcgCCCGgcGUGg -3'
miRNA:   3'- -GCGUCGUCGa-------GC---UGCCa-GGGCaaCAU- -5'
6497 5' -57.3 NC_001847.1 + 31228 0.66 0.814075
Target:  5'- cCGCGGCGGCgccgcccgCGgccGCGGcgCCCGgcGUGg -3'
miRNA:   3'- -GCGUCGUCGa-------GC---UGCCa-GGGCaaCAU- -5'
6497 5' -57.3 NC_001847.1 + 78204 0.66 0.822725
Target:  5'- uCGCGGCGGCU--GCGGUgcaCCGUcGUGu -3'
miRNA:   3'- -GCGUCGUCGAgcUGCCAg--GGCAaCAU- -5'
6497 5' -57.3 NC_001847.1 + 79903 0.66 0.822725
Target:  5'- aCGCAGCAGCggGACGcGUCCgcaGUg--- -3'
miRNA:   3'- -GCGUCGUCGagCUGC-CAGGg--CAacau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.