Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6497 | 5' | -57.3 | NC_001847.1 | + | 132300 | 0.67 | 0.749349 |
Target: 5'- uCGCAGCGGCaUGGCGGacCCCGa---- -3' miRNA: 3'- -GCGUCGUCGaGCUGCCa-GGGCaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 47716 | 0.67 | 0.74838 |
Target: 5'- gCGCAGCAGCUCuucgagcgcggcgGGCGGggcCCCGc---- -3' miRNA: 3'- -GCGUCGUCGAG-------------CUGCCa--GGGCaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 125473 | 0.68 | 0.71987 |
Target: 5'- gGCGGCAGCUCGcgGCGGgcgcgaggacgCCCGg---- -3' miRNA: 3'- gCGUCGUCGAGC--UGCCa----------GGGCaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 88264 | 0.68 | 0.71987 |
Target: 5'- aGCGGC-GCUCGcACGcGUCCCGg---- -3' miRNA: 3'- gCGUCGuCGAGC-UGC-CAGGGCaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 66882 | 0.68 | 0.709879 |
Target: 5'- uCGCGcGCGGguaCUCGuCGGUCCCGgUGUu -3' miRNA: 3'- -GCGU-CGUC---GAGCuGCCAGGGCaACAu -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 91732 | 0.68 | 0.689708 |
Target: 5'- aGCAGCAGCgCGA-GGUCCgCGUa--- -3' miRNA: 3'- gCGUCGUCGaGCUgCCAGG-GCAacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 71872 | 0.69 | 0.679546 |
Target: 5'- aGCGGCcGCgagCGcGCGG-CCCGUUGUu -3' miRNA: 3'- gCGUCGuCGa--GC-UGCCaGGGCAACAu -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 14421 | 0.69 | 0.679546 |
Target: 5'- uCGCAGCGGgucgcgacugcCUCGACGG-CgCCGggGUGc -3' miRNA: 3'- -GCGUCGUC-----------GAGCUGCCaG-GGCaaCAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 85272 | 0.69 | 0.669344 |
Target: 5'- uGCAGCAGCUCGcagaguGCGG---CGUUGUAg -3' miRNA: 3'- gCGUCGUCGAGC------UGCCaggGCAACAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 24941 | 0.69 | 0.648858 |
Target: 5'- -aCAGCAGCUgGGCGGcuugCCCGgcagGUGg -3' miRNA: 3'- gcGUCGUCGAgCUGCCa---GGGCaa--CAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 33584 | 0.69 | 0.648858 |
Target: 5'- gCGCGGCccgGGCUCGGCGG-CCUGcgGa- -3' miRNA: 3'- -GCGUCG---UCGAGCUGCCaGGGCaaCau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 60752 | 0.69 | 0.648858 |
Target: 5'- gCGCGGCGGC-CGcGCGGUCCCc----- -3' miRNA: 3'- -GCGUCGUCGaGC-UGCCAGGGcaacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 100584 | 0.69 | 0.648858 |
Target: 5'- gGCGuGCAGCUUGGCGG-CCUGUg--- -3' miRNA: 3'- gCGU-CGUCGAGCUGCCaGGGCAacau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 127753 | 0.69 | 0.648858 |
Target: 5'- -aCAGCAGCUgCGGCGGcuugCCCGgcagGUGg -3' miRNA: 3'- gcGUCGUCGA-GCUGCCa---GGGCaa--CAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 43675 | 0.69 | 0.63859 |
Target: 5'- cCGCAGguGCUCGACGacCUCG-UGUGg -3' miRNA: 3'- -GCGUCguCGAGCUGCcaGGGCaACAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 59067 | 0.69 | 0.63859 |
Target: 5'- gGCGGCAGCUCGGCuGGcgcgcccucgCCCGgguaGUAg -3' miRNA: 3'- gCGUCGUCGAGCUG-CCa---------GGGCaa--CAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 22679 | 0.69 | 0.628318 |
Target: 5'- aGCAGCgAGCa-GGCGGUCCgCGcUGUAc -3' miRNA: 3'- gCGUCG-UCGagCUGCCAGG-GCaACAU- -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 58758 | 0.7 | 0.587335 |
Target: 5'- gGCGGCGGCcgCGACGGUCgCUGgUGc- -3' miRNA: 3'- gCGUCGUCGa-GCUGCCAG-GGCaACau -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 105769 | 0.71 | 0.546869 |
Target: 5'- gCGCGGCAGCUCcggccgcccGCGGUCgCCGcUGUu -3' miRNA: 3'- -GCGUCGUCGAGc--------UGCCAG-GGCaACAu -5' |
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6497 | 5' | -57.3 | NC_001847.1 | + | 78045 | 0.71 | 0.526961 |
Target: 5'- gCGCGGCGGCgCGGCGGUCCa------ -3' miRNA: 3'- -GCGUCGUCGaGCUGCCAGGgcaacau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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