Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 6497 | 5' | -57.3 | NC_001847.1 | + | 132509 | 0.72 | 0.459719 |
|
Target: 5'- cCGCaAGCGGCgaCGGCGGUCCCGc---- -3' miRNA: 3'- -GCG-UCGUCGa-GCUGCCAGGGCaacau -5' |
|||||||
| 6497 | 5' | -57.3 | NC_001847.1 | + | 16852 | 0.72 | 0.459719 |
|
Target: 5'- uGCAGguGUagUCGACGGgCCCGUcgguUGUAg -3' miRNA: 3'- gCGUCguCG--AGCUGCCaGGGCA----ACAU- -5' |
|||||||
| 6497 | 5' | -57.3 | NC_001847.1 | + | 96860 | 0.73 | 0.450481 |
|
Target: 5'- gGCGGCGGUgggCGGCGGUCCgCGcUGg- -3' miRNA: 3'- gCGUCGUCGa--GCUGCCAGG-GCaACau -5' |
|||||||
| 6497 | 5' | -57.3 | NC_001847.1 | + | 88880 | 0.73 | 0.423396 |
|
Target: 5'- gCGCGGCGGCggCGGCGGcUCCCGc---- -3' miRNA: 3'- -GCGUCGUCGa-GCUGCC-AGGGCaacau -5' |
|||||||
| 6497 | 5' | -57.3 | NC_001847.1 | + | 105845 | 0.75 | 0.33301 |
|
Target: 5'- gCGCcgAGCAGCUCGGCGG-CCCGg---- -3' miRNA: 3'- -GCG--UCGUCGAGCUGCCaGGGCaacau -5' |
|||||||
| 6497 | 5' | -57.3 | NC_001847.1 | + | 3032 | 0.75 | 0.33301 |
|
Target: 5'- gCGCcgAGCAGCUCGGCGG-CCCGg---- -3' miRNA: 3'- -GCG--UCGUCGAGCUGCCaGGGCaacau -5' |
|||||||
| 6497 | 5' | -57.3 | NC_001847.1 | + | 80779 | 0.78 | 0.228221 |
|
Target: 5'- cCGCAGCAGCUCGcgcaGCGcGUCCuCGUUGc- -3' miRNA: 3'- -GCGUCGUCGAGC----UGC-CAGG-GCAACau -5' |
|||||||
| 6497 | 5' | -57.3 | NC_001847.1 | + | 14780 | 1.07 | 0.00251 |
|
Target: 5'- gCGCAGCAGCUCGACGGUCCCGUUGUAg -3' miRNA: 3'- -GCGUCGUCGAGCUGCCAGGGCAACAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home