miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 5' -57.3 NC_001847.1 + 134244 0.67 0.796283
Target:  5'- gGCGGCGGCcggcggccgCGGCGGcCCCGg---- -3'
miRNA:   3'- gCGUCGUCGa--------GCUGCCaGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 134041 0.66 0.814075
Target:  5'- cCGCGGCGGCgccgcccgCGgccGCGGcgCCCGgcGUGg -3'
miRNA:   3'- -GCGUCGUCGa-------GC---UGCCa-GGGCaaCAU- -5'
6497 5' -57.3 NC_001847.1 + 132509 0.72 0.459719
Target:  5'- cCGCaAGCGGCgaCGGCGGUCCCGc---- -3'
miRNA:   3'- -GCG-UCGUCGa-GCUGCCAGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 132300 0.67 0.749349
Target:  5'- uCGCAGCGGCaUGGCGGacCCCGa---- -3'
miRNA:   3'- -GCGUCGUCGaGCUGCCa-GGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 129109 0.67 0.781617
Target:  5'- gCGCAGUuuaacguccaaAGCUacaucgaacagaacgUGGCGGUCgCCGUUGUu -3'
miRNA:   3'- -GCGUCG-----------UCGA---------------GCUGCCAG-GGCAACAu -5'
6497 5' -57.3 NC_001847.1 + 127753 0.69 0.648858
Target:  5'- -aCAGCAGCUgCGGCGGcuugCCCGgcagGUGg -3'
miRNA:   3'- gcGUCGUCGA-GCUGCCa---GGGCaa--CAU- -5'
6497 5' -57.3 NC_001847.1 + 127352 0.67 0.787159
Target:  5'- cCGCGGCAGgggCGGCGGggCCCGa---- -3'
miRNA:   3'- -GCGUCGUCga-GCUGCCa-GGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 125473 0.68 0.71987
Target:  5'- gGCGGCAGCUCGcgGCGGgcgcgaggacgCCCGg---- -3'
miRNA:   3'- gCGUCGUCGAGC--UGCCa----------GGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 105845 0.75 0.33301
Target:  5'- gCGCcgAGCAGCUCGGCGG-CCCGg---- -3'
miRNA:   3'- -GCG--UCGUCGAGCUGCCaGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 105769 0.71 0.546869
Target:  5'- gCGCGGCAGCUCcggccgcccGCGGUCgCCGcUGUu -3'
miRNA:   3'- -GCGUCGUCGAGc--------UGCCAG-GGCaACAu -5'
6497 5' -57.3 NC_001847.1 + 104541 0.67 0.778827
Target:  5'- gCGCGGCGGCcccggggccgcuacgCGGCGGUCCUccUGg- -3'
miRNA:   3'- -GCGUCGUCGa--------------GCUGCCAGGGcaACau -5'
6497 5' -57.3 NC_001847.1 + 104290 0.66 0.831201
Target:  5'- cCGCGGCAGagccgcagCGGCGGcgCCuCGggGUAg -3'
miRNA:   3'- -GCGUCGUCga------GCUGCCa-GG-GCaaCAU- -5'
6497 5' -57.3 NC_001847.1 + 100584 0.69 0.648858
Target:  5'- gGCGuGCAGCUUGGCGG-CCUGUg--- -3'
miRNA:   3'- gCGU-CGUCGAGCUGCCaGGGCAacau -5'
6497 5' -57.3 NC_001847.1 + 97441 0.66 0.839494
Target:  5'- aGCAGCAGCgcgcacgUGACgaGGUCCagcgCGUUGa- -3'
miRNA:   3'- gCGUCGUCGa------GCUG--CCAGG----GCAACau -5'
6497 5' -57.3 NC_001847.1 + 96860 0.73 0.450481
Target:  5'- gGCGGCGGUgggCGGCGGUCCgCGcUGg- -3'
miRNA:   3'- gCGUCGUCGa--GCUGCCAGG-GCaACau -5'
6497 5' -57.3 NC_001847.1 + 93759 0.66 0.839494
Target:  5'- gCGCGGCuGCcggCGGCGG-CCCGg---- -3'
miRNA:   3'- -GCGUCGuCGa--GCUGCCaGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 91732 0.68 0.689708
Target:  5'- aGCAGCAGCgCGA-GGUCCgCGUa--- -3'
miRNA:   3'- gCGUCGUCGaGCUgCCAGG-GCAacau -5'
6497 5' -57.3 NC_001847.1 + 88880 0.73 0.423396
Target:  5'- gCGCGGCGGCggCGGCGGcUCCCGc---- -3'
miRNA:   3'- -GCGUCGUCGa-GCUGCC-AGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 88264 0.68 0.71987
Target:  5'- aGCGGC-GCUCGcACGcGUCCCGg---- -3'
miRNA:   3'- gCGUCGuCGAGC-UGC-CAGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 85272 0.69 0.669344
Target:  5'- uGCAGCAGCUCGcagaguGCGG---CGUUGUAg -3'
miRNA:   3'- gCGUCGUCGAGC------UGCCaggGCAACAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.