miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 3' -50.7 NC_001847.1 + 19728 0.67 0.983537
Target:  5'- aCGAGGUUGgc--CGGACGCGGCgGGc -3'
miRNA:   3'- -GCUUCGACacauGUUUGCGCCGgUUc -5'
6498 3' -50.7 NC_001847.1 + 34733 0.67 0.983537
Target:  5'- uCGAGGCgaacuccGCcuucGACGCGGCCGAGc -3'
miRNA:   3'- -GCUUCGacaca--UGu---UUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 68440 0.67 0.983537
Target:  5'- uCGAAGCggcc-GCAGAgguccgcgccCGCGGCCGGGg -3'
miRNA:   3'- -GCUUCGacacaUGUUU----------GCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 130908 0.67 0.983537
Target:  5'- gGggGCggcgGUGCccuCGgGGCCAGGa -3'
miRNA:   3'- gCuuCGaca-CAUGuuuGCgCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 53816 0.67 0.983537
Target:  5'- -aAGGC-GUGUcGCGGGCGCGGCUg-- -3'
miRNA:   3'- gcUUCGaCACA-UGUUUGCGCCGGuuc -5'
6498 3' -50.7 NC_001847.1 + 88728 0.67 0.983537
Target:  5'- gGAGGCUGUGcugcucgAUAAGCaGCaGGCCGc- -3'
miRNA:   3'- gCUUCGACACa------UGUUUG-CG-CCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 28095 0.67 0.983537
Target:  5'- gGggGCggcgGUGCccuCGgGGCCAGGa -3'
miRNA:   3'- gCuuCGaca-CAUGuuuGCgCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 69475 0.67 0.983537
Target:  5'- aCGGccAGCUGcgcgaugGUGCGGgcgcgcACGCGGCCGu- -3'
miRNA:   3'- -GCU--UCGACa------CAUGUU------UGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 15807 0.67 0.981475
Target:  5'- gGAGGCggcgGUGUACGAaaACGaaGGCgAGGg -3'
miRNA:   3'- gCUUCGa---CACAUGUU--UGCg-CCGgUUC- -5'
6498 3' -50.7 NC_001847.1 + 76210 0.67 0.979225
Target:  5'- aGAGGC-GUGaGCAGcGCGCGuGCCGAc -3'
miRNA:   3'- gCUUCGaCACaUGUU-UGCGC-CGGUUc -5'
6498 3' -50.7 NC_001847.1 + 78295 0.67 0.976778
Target:  5'- gCGAGGCg--GUGCucGgGCGGCUggGc -3'
miRNA:   3'- -GCUUCGacaCAUGuuUgCGCCGGuuC- -5'
6498 3' -50.7 NC_001847.1 + 71070 0.67 0.976522
Target:  5'- cCGguGCUGgcgGCGcucggccGGCGCGGCCAGa -3'
miRNA:   3'- -GCuuCGACacaUGU-------UUGCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 43862 0.68 0.974126
Target:  5'- cCGAGGCUGUGUAUAAGCaccuauuuuGCGaccCCAu- -3'
miRNA:   3'- -GCUUCGACACAUGUUUG---------CGCc--GGUuc -5'
6498 3' -50.7 NC_001847.1 + 37447 0.68 0.974126
Target:  5'- gCGgcGCUGUGgacgACAcuCGCGGUgGAc -3'
miRNA:   3'- -GCuuCGACACa---UGUuuGCGCCGgUUc -5'
6498 3' -50.7 NC_001847.1 + 24760 0.68 0.974126
Target:  5'- --cGGCUGagGUGCGAcGCGCGGUCGu- -3'
miRNA:   3'- gcuUCGACa-CAUGUU-UGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 20587 0.68 0.973006
Target:  5'- aGAGgccGCUGUGUACcagcaugcccuCGCGGCUAAa -3'
miRNA:   3'- gCUU---CGACACAUGuuu--------GCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 135017 0.68 0.971261
Target:  5'- cCGAGGCcc---GCGGGCGgGGCCGGGg -3'
miRNA:   3'- -GCUUCGacacaUGUUUGCgCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 32204 0.68 0.971261
Target:  5'- cCGAGGCcc---GCGGGCGgGGCCGGGg -3'
miRNA:   3'- -GCUUCGacacaUGUUUGCgCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 133982 0.68 0.971261
Target:  5'- cCGggGCUGgGaGCGcGCGCGGCa--- -3'
miRNA:   3'- -GCuuCGACaCaUGUuUGCGCCGguuc -5'
6498 3' -50.7 NC_001847.1 + 75055 0.68 0.971261
Target:  5'- gGAGGCUGcccACGAACaCGGCCAu- -3'
miRNA:   3'- gCUUCGACacaUGUUUGcGCCGGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.