miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 3' -50.7 NC_001847.1 + 98080 0.66 0.989689
Target:  5'- uGAAGUUuaccagGUGCAugaaggcgcccaugAGCGCGGCCAc- -3'
miRNA:   3'- gCUUCGAca----CAUGU--------------UUGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 37293 0.66 0.989689
Target:  5'- uGGAGCauUGUAUAAggcgcgcgcagcccGCGCGcGCCGAGc -3'
miRNA:   3'- gCUUCGacACAUGUU--------------UGCGC-CGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 75999 0.66 0.98869
Target:  5'- gCGgcGCcG-GUACAAcugggaccacccGCGCGGCCGGa -3'
miRNA:   3'- -GCuuCGaCaCAUGUU------------UGCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 37576 0.66 0.98869
Target:  5'- gCGgcGCUGgccgcUGCGGcuGCgGCGGCCGGGg -3'
miRNA:   3'- -GCuuCGACac---AUGUU--UG-CGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 93538 0.66 0.98869
Target:  5'- cCGGAGCgcccggGUuacGUGcCGAGC-CGGCCAAGu -3'
miRNA:   3'- -GCUUCGa-----CA---CAU-GUUUGcGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 57039 0.66 0.98869
Target:  5'- aGGAGCgcgcccUGUGgGCcGAgGCGGCUAAGc -3'
miRNA:   3'- gCUUCG------ACACaUGuUUgCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 35721 0.66 0.98869
Target:  5'- cCGGAGCUGg--ACGuggcCGCGGUgGAGu -3'
miRNA:   3'- -GCUUCGACacaUGUuu--GCGCCGgUUC- -5'
6498 3' -50.7 NC_001847.1 + 81595 0.66 0.98869
Target:  5'- gGGAGCgucguUGUGCAcgaggccgccGGCGUGGCCGu- -3'
miRNA:   3'- gCUUCGac---ACAUGU----------UUGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 56183 0.66 0.987135
Target:  5'- cCGAGGCUGc--GCGAGCGCcagccugcggGGCaCAGGg -3'
miRNA:   3'- -GCUUCGACacaUGUUUGCG----------CCG-GUUC- -5'
6498 3' -50.7 NC_001847.1 + 48185 0.66 0.987135
Target:  5'- gCGuccuGCUGUGccGCGccgGCGGCCAGGg -3'
miRNA:   3'- -GCuu--CGACACa-UGUuugCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 49224 0.66 0.987135
Target:  5'- cCGcGGGCUucGUGUACGucugcGACGCGGCUc-- -3'
miRNA:   3'- -GC-UUCGA--CACAUGU-----UUGCGCCGGuuc -5'
6498 3' -50.7 NC_001847.1 + 117831 0.66 0.987135
Target:  5'- aCGcGGCcGUGUGCc-GCGCcGCCGAGu -3'
miRNA:   3'- -GCuUCGaCACAUGuuUGCGcCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 28875 0.66 0.987135
Target:  5'- gCGgcGCUGgg-GCGAguugcagagcACGCGGCCGc- -3'
miRNA:   3'- -GCuuCGACacaUGUU----------UGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 107222 0.66 0.987135
Target:  5'- cCGAgacGGCcGcccUGgccuccGCAAGCGCGGCCGGGc -3'
miRNA:   3'- -GCU---UCGaC---ACa-----UGUUUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 29848 0.66 0.987135
Target:  5'- gGAGGCUGUGcugggcgagcUGCAcacgguagcuacGAcCGCGGCgGAGu -3'
miRNA:   3'- gCUUCGACAC----------AUGU------------UU-GCGCCGgUUC- -5'
6498 3' -50.7 NC_001847.1 + 84426 0.66 0.987135
Target:  5'- cCGGugcAGCgucgUGUGUGCGcACGCGuGCCGGu -3'
miRNA:   3'- -GCU---UCG----ACACAUGUuUGCGC-CGGUUc -5'
6498 3' -50.7 NC_001847.1 + 111688 0.67 0.985421
Target:  5'- cCGAGGCg----GCGGACGCGGCg--- -3'
miRNA:   3'- -GCUUCGacacaUGUUUGCGCCGguuc -5'
6498 3' -50.7 NC_001847.1 + 100130 0.67 0.985421
Target:  5'- gCGucAGCUGgcccACGucCGCGGCCGGGa -3'
miRNA:   3'- -GCu-UCGACaca-UGUuuGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 17437 0.67 0.983537
Target:  5'- gCGgcGCcaaGUGUACAcgcccucgGugGCGGCCGu- -3'
miRNA:   3'- -GCuuCGa--CACAUGU--------UugCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 32434 0.67 0.983537
Target:  5'- uCGggGCgGUGgccCAGGCGCuGCCGc- -3'
miRNA:   3'- -GCuuCGaCACau-GUUUGCGcCGGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.