miRNA display CGI


Results 21 - 40 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 3' -50.7 NC_001847.1 + 28875 0.66 0.987135
Target:  5'- gCGgcGCUGgg-GCGAguugcagagcACGCGGCCGc- -3'
miRNA:   3'- -GCuuCGACacaUGUU----------UGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 134202 0.66 0.992492
Target:  5'- uGGAGCg----GCGcGCGCGGgCCGAGg -3'
miRNA:   3'- gCUUCGacacaUGUuUGCGCC-GGUUC- -5'
6498 3' -50.7 NC_001847.1 + 110138 0.66 0.990095
Target:  5'- uGAAGCUGcUGgacuCGAugGCcauGGCCAu- -3'
miRNA:   3'- gCUUCGAC-ACau--GUUugCG---CCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 49527 0.66 0.991359
Target:  5'- gCGggGCUccccUGCuucuACGCGGCCAu- -3'
miRNA:   3'- -GCuuCGAcac-AUGuu--UGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 89032 0.66 0.992166
Target:  5'- aCGAcGCcGUGUGCGcgcugggcgacggcAugGCGcGCCGGGu -3'
miRNA:   3'- -GCUuCGaCACAUGU--------------UugCGC-CGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 98080 0.66 0.989689
Target:  5'- uGAAGUUuaccagGUGCAugaaggcgcccaugAGCGCGGCCAc- -3'
miRNA:   3'- gCUUCGAca----CAUGU--------------UUGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 20068 0.66 0.990095
Target:  5'- gGGAGCggcGUGgcgGCucccgcGGCGCGGCCcGGc -3'
miRNA:   3'- gCUUCGa--CACa--UGu-----UUGCGCCGGuUC- -5'
6498 3' -50.7 NC_001847.1 + 52881 0.66 0.992492
Target:  5'- -cGAGCgc-GUACAGGCGaUGGCCAGu -3'
miRNA:   3'- gcUUCGacaCAUGUUUGC-GCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 56183 0.66 0.987135
Target:  5'- cCGAGGCUGc--GCGAGCGCcagccugcggGGCaCAGGg -3'
miRNA:   3'- -GCUUCGACacaUGUUUGCG----------CCG-GUUC- -5'
6498 3' -50.7 NC_001847.1 + 75999 0.66 0.98869
Target:  5'- gCGgcGCcG-GUACAAcugggaccacccGCGCGGCCGGa -3'
miRNA:   3'- -GCuuCGaCaCAUGUU------------UGCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 48185 0.66 0.987135
Target:  5'- gCGuccuGCUGUGccGCGccgGCGGCCAGGg -3'
miRNA:   3'- -GCuu--CGACACa-UGUuugCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 107222 0.66 0.987135
Target:  5'- cCGAgacGGCcGcccUGgccuccGCAAGCGCGGCCGGGc -3'
miRNA:   3'- -GCU---UCGaC---ACa-----UGUUUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 84426 0.66 0.987135
Target:  5'- cCGGugcAGCgucgUGUGUGCGcACGCGuGCCGGu -3'
miRNA:   3'- -GCU---UCG----ACACAUGUuUGCGC-CGGUUc -5'
6498 3' -50.7 NC_001847.1 + 29848 0.66 0.987135
Target:  5'- gGAGGCUGUGcugggcgagcUGCAcacgguagcuacGAcCGCGGCgGAGu -3'
miRNA:   3'- gCUUCGACAC----------AUGU------------UU-GCGCCGgUUC- -5'
6498 3' -50.7 NC_001847.1 + 37293 0.66 0.989689
Target:  5'- uGGAGCauUGUAUAAggcgcgcgcagcccGCGCGcGCCGAGc -3'
miRNA:   3'- gCUUCGacACAUGUU--------------UGCGC-CGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 117831 0.66 0.987135
Target:  5'- aCGcGGCcGUGUGCc-GCGCcGCCGAGu -3'
miRNA:   3'- -GCuUCGaCACAUGuuUGCGcCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 130908 0.67 0.983537
Target:  5'- gGggGCggcgGUGCccuCGgGGCCAGGa -3'
miRNA:   3'- gCuuCGaca-CAUGuuuGCgCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 15807 0.67 0.981475
Target:  5'- gGAGGCggcgGUGUACGAaaACGaaGGCgAGGg -3'
miRNA:   3'- gCUUCGa---CACAUGUU--UGCg-CCGgUUC- -5'
6498 3' -50.7 NC_001847.1 + 32434 0.67 0.983537
Target:  5'- uCGggGCgGUGgccCAGGCGCuGCCGc- -3'
miRNA:   3'- -GCuuCGaCACau-GUUUGCGcCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 53816 0.67 0.983537
Target:  5'- -aAGGC-GUGUcGCGGGCGCGGCUg-- -3'
miRNA:   3'- gcUUCGaCACA-UGUUUGCGCCGGuuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.