miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 3' -50.7 NC_001847.1 + 57039 0.66 0.98869
Target:  5'- aGGAGCgcgcccUGUGgGCcGAgGCGGCUAAGc -3'
miRNA:   3'- gCUUCG------ACACaUGuUUgCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 28822 0.66 0.992492
Target:  5'- aCGcAGGCgcgGUgGUGCGGcugcuagaacGCGCGGCCGc- -3'
miRNA:   3'- -GC-UUCGa--CA-CAUGUU----------UGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 37576 0.66 0.98869
Target:  5'- gCGgcGCUGgccgcUGCGGcuGCgGCGGCCGGGg -3'
miRNA:   3'- -GCuuCGACac---AUGUU--UG-CGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 35721 0.66 0.98869
Target:  5'- cCGGAGCUGg--ACGuggcCGCGGUgGAGu -3'
miRNA:   3'- -GCUUCGACacaUGUuu--GCGCCGgUUC- -5'
6498 3' -50.7 NC_001847.1 + 52570 0.66 0.991359
Target:  5'- gCGAgAGCUG-GaGCucgAGGCgGCGGCCGAGg -3'
miRNA:   3'- -GCU-UCGACaCaUG---UUUG-CGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 81595 0.66 0.98869
Target:  5'- gGGAGCgucguUGUGCAcgaggccgccGGCGUGGCCGu- -3'
miRNA:   3'- gCUUCGac---ACAUGU----------UUGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 14655 0.66 0.991359
Target:  5'- gCGgcGCUgacGUGaACAucgacGGCGCGGCCGGc -3'
miRNA:   3'- -GCuuCGA---CACaUGU-----UUGCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 35923 0.66 0.991359
Target:  5'- gGGAGCcuuUGUGgcgGCGcgccgccGCGCGGCCGc- -3'
miRNA:   3'- gCUUCG---ACACa--UGUu------UGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 37310 0.66 0.989961
Target:  5'- aCGugcuAGCcgUGUGgcgGCAcgcgcccGACGCGGCCAc- -3'
miRNA:   3'- -GCu---UCG--ACACa--UGU-------UUGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 99791 0.66 0.990095
Target:  5'- gGggGCagcgccUGUgGUGCGGGgucggaGCGGCCGGGg -3'
miRNA:   3'- gCuuCG------ACA-CAUGUUUg-----CGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 93538 0.66 0.98869
Target:  5'- cCGGAGCgcccggGUuacGUGcCGAGC-CGGCCAAGu -3'
miRNA:   3'- -GCUUCGa-----CA---CAU-GUUUGcGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 28875 0.66 0.987135
Target:  5'- gCGgcGCUGgg-GCGAguugcagagcACGCGGCCGc- -3'
miRNA:   3'- -GCuuCGACacaUGUU----------UGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 29848 0.66 0.987135
Target:  5'- gGAGGCUGUGcugggcgagcUGCAcacgguagcuacGAcCGCGGCgGAGu -3'
miRNA:   3'- gCUUCGACAC----------AUGU------------UU-GCGCCGgUUC- -5'
6498 3' -50.7 NC_001847.1 + 48185 0.66 0.987135
Target:  5'- gCGuccuGCUGUGccGCGccgGCGGCCAGGg -3'
miRNA:   3'- -GCuu--CGACACa-UGUuugCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 73 0.66 0.990095
Target:  5'- gGggGCgggGUGggggAUggGCGCGGagcgCGAGg -3'
miRNA:   3'- gCuuCGa--CACa---UGuuUGCGCCg---GUUC- -5'
6498 3' -50.7 NC_001847.1 + 29466 0.66 0.992492
Target:  5'- cCGAAGCgcc--GCc--CGCGGCCGAGg -3'
miRNA:   3'- -GCUUCGacacaUGuuuGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 134202 0.66 0.992492
Target:  5'- uGGAGCg----GCGcGCGCGGgCCGAGg -3'
miRNA:   3'- gCUUCGacacaUGUuUGCGCC-GGUUC- -5'
6498 3' -50.7 NC_001847.1 + 49224 0.66 0.987135
Target:  5'- cCGcGGGCUucGUGUACGucugcGACGCGGCUc-- -3'
miRNA:   3'- -GC-UUCGA--CACAUGU-----UUGCGCCGGuuc -5'
6498 3' -50.7 NC_001847.1 + 5147 0.66 0.992492
Target:  5'- aGAAGCagggGUGUGCGGGCcaggcaucgGCGGCgAu- -3'
miRNA:   3'- gCUUCGa---CACAUGUUUG---------CGCCGgUuc -5'
6498 3' -50.7 NC_001847.1 + 10861 0.66 0.991359
Target:  5'- cCGAGGCgcg--GCGGGCGCGGgcgcCCAGGc -3'
miRNA:   3'- -GCUUCGacacaUGUUUGCGCC----GGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.