miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 3' -50.7 NC_001847.1 + 14490 1.11 0.006139
Target:  5'- cCGAAGCUGUGUACAAACGCGGCCAAGg -3'
miRNA:   3'- -GCUUCGACACAUGUUUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 79372 0.79 0.500123
Target:  5'- gCGAAGCUGUGcgGCAGcGCGCGGCUc-- -3'
miRNA:   3'- -GCUUCGACACa-UGUU-UGCGCCGGuuc -5'
6498 3' -50.7 NC_001847.1 + 86175 0.77 0.615426
Target:  5'- gCGGAGCUacGUGaugACGGGCGCGGCCu-- -3'
miRNA:   3'- -GCUUCGA--CACa--UGUUUGCGCCGGuuc -5'
6498 3' -50.7 NC_001847.1 + 3974 0.76 0.668993
Target:  5'- gCGAGGUgggccGUGaGCAcgccAGCGCGGCCAAGu -3'
miRNA:   3'- -GCUUCGa----CACaUGU----UUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 14205 0.75 0.700815
Target:  5'- gCGggGCUGgcgGU-CAGGC-CGGCCGGGg -3'
miRNA:   3'- -GCuuCGACa--CAuGUUUGcGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 25252 0.75 0.711309
Target:  5'- -cGAGCUGccgGUAC-AGCGCGGUCAGGu -3'
miRNA:   3'- gcUUCGACa--CAUGuUUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 33823 0.75 0.711309
Target:  5'- gGAgcGGCUGUGcGCAGACGCGGgCGc- -3'
miRNA:   3'- gCU--UCGACACaUGUUUGCGCCgGUuc -5'
6498 3' -50.7 NC_001847.1 + 45571 0.75 0.711309
Target:  5'- gCGggGCUGUucaagaugGUGCucACGCGGCCc-- -3'
miRNA:   3'- -GCuuCGACA--------CAUGuuUGCGCCGGuuc -5'
6498 3' -50.7 NC_001847.1 + 7239 0.75 0.721729
Target:  5'- aGcGGCUGgucggguggcUGUGCGGGCGCGGCgGGGg -3'
miRNA:   3'- gCuUCGAC----------ACAUGUUUGCGCCGgUUC- -5'
6498 3' -50.7 NC_001847.1 + 33025 0.74 0.75244
Target:  5'- gCGggGCgagGcGCGGACGCGGCgCAGGa -3'
miRNA:   3'- -GCuuCGacaCaUGUUUGCGCCG-GUUC- -5'
6498 3' -50.7 NC_001847.1 + 36840 0.74 0.762458
Target:  5'- gGggGCUGgcggacGUGCGcucGGCgGCGGCCGAGc -3'
miRNA:   3'- gCuuCGACa-----CAUGU---UUG-CGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 96423 0.74 0.772349
Target:  5'- gCGggGCcGgcgGCAGGCGCGGCCccgGAGg -3'
miRNA:   3'- -GCuuCGaCacaUGUUUGCGCCGG---UUC- -5'
6498 3' -50.7 NC_001847.1 + 125081 0.74 0.772349
Target:  5'- gGgcGCUGg--GCccGCGCGGCCAAGa -3'
miRNA:   3'- gCuuCGACacaUGuuUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 42015 0.73 0.791709
Target:  5'- aCGAAGCUGcgccGUGCcGGCGCGGCg--- -3'
miRNA:   3'- -GCUUCGACa---CAUGuUUGCGCCGguuc -5'
6498 3' -50.7 NC_001847.1 + 63495 0.73 0.801157
Target:  5'- gGAAGCUGUucACAAAgGCGGCgCAGc -3'
miRNA:   3'- gCUUCGACAcaUGUUUgCGCCG-GUUc -5'
6498 3' -50.7 NC_001847.1 + 3513 0.73 0.810437
Target:  5'- -cGAGCUucGUGUACGGGcCGUGGCCGAc -3'
miRNA:   3'- gcUUCGA--CACAUGUUU-GCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 33043 0.73 0.819539
Target:  5'- -cGAGCUGgacGCGcuCGCGGCCGAGg -3'
miRNA:   3'- gcUUCGACacaUGUuuGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 75198 0.73 0.819539
Target:  5'- aCGggGuCUGUcUGCAGGCGCacggucagcgaGGCCAGGu -3'
miRNA:   3'- -GCuuC-GACAcAUGUUUGCG-----------CCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 33396 0.72 0.837173
Target:  5'- aGGAGCUGgacgccGUGCugaguGACGUGGCCGc- -3'
miRNA:   3'- gCUUCGACa-----CAUGu----UUGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 117430 0.72 0.853989
Target:  5'- cCGAGccGCUGUacGUGCAcugcGGCGUGGCCGAc -3'
miRNA:   3'- -GCUU--CGACA--CAUGU----UUGCGCCGGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.