miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 3' -50.7 NC_001847.1 + 24157 0.72 0.862069
Target:  5'- -uGAGCUuUGUGCGAACGCuggaGGCCAGc -3'
miRNA:   3'- gcUUCGAcACAUGUUUGCG----CCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 126970 0.72 0.862069
Target:  5'- -uGAGCUuUGUGCGAACGCuggaGGCCAGc -3'
miRNA:   3'- gcUUCGAcACAUGUUUGCG----CCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 88091 0.71 0.87754
Target:  5'- uGGAGCUGUcgGCGguGGCGCGGCUg-- -3'
miRNA:   3'- gCUUCGACAcaUGU--UUGCGCCGGuuc -5'
6498 3' -50.7 NC_001847.1 + 74470 0.71 0.87754
Target:  5'- cCGGAcguGCUGUGccgcgagggcGCGGACGCGGCCGc- -3'
miRNA:   3'- -GCUU---CGACACa---------UGUUUGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 130784 0.71 0.89205
Target:  5'- gGucGCgGUGgagGCGGcCGCGGCCGGGg -3'
miRNA:   3'- gCuuCGaCACa--UGUUuGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 27971 0.71 0.89205
Target:  5'- gGucGCgGUGgagGCGGcCGCGGCCGGGg -3'
miRNA:   3'- gCuuCGaCACa--UGUUuGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 12475 0.71 0.89205
Target:  5'- cCGcGGCUucccgcGUGgcgGCGGGgGCGGCCAAGa -3'
miRNA:   3'- -GCuUCGA------CACa--UGUUUgCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 15536 0.71 0.89205
Target:  5'- gCGGgcuGCUGgcgccgGUGCGcGCGCGGCCGu- -3'
miRNA:   3'- -GCUu--CGACa-----CAUGUuUGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 119540 0.71 0.898931
Target:  5'- cCGGcaGGCUGg--GCAAggggcGCGCGGCCAGa -3'
miRNA:   3'- -GCU--UCGACacaUGUU-----UGCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 87919 0.71 0.898931
Target:  5'- gCGggGC-GUGggGCuGGGCGCGGCCGc- -3'
miRNA:   3'- -GCuuCGaCACa-UG-UUUGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 68764 0.71 0.905558
Target:  5'- aCGAcGCUGUGguagGCGAGCuccaucgccgcgGCGGCCGc- -3'
miRNA:   3'- -GCUuCGACACa---UGUUUG------------CGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 40448 0.71 0.905558
Target:  5'- uGAAGCgccaGUACuuGCGCGGCaCGGGc -3'
miRNA:   3'- gCUUCGaca-CAUGuuUGCGCCG-GUUC- -5'
6498 3' -50.7 NC_001847.1 + 99859 0.7 0.911928
Target:  5'- gCGggGCUGcgcaGUACGuuaccucuucuAGCGCGGCUGAu -3'
miRNA:   3'- -GCuuCGACa---CAUGU-----------UUGCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 89275 0.7 0.911928
Target:  5'- aCGAcGCUGUuucGCGcgcCGCGGCCGAGg -3'
miRNA:   3'- -GCUuCGACAca-UGUuu-GCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 71230 0.7 0.918037
Target:  5'- uGggGUc---UGCGAGCGCGGCCAAu -3'
miRNA:   3'- gCuuCGacacAUGUUUGCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 67510 0.7 0.918037
Target:  5'- aCGAgGGCacgGUcGCGGACGCGGCCAAc -3'
miRNA:   3'- -GCU-UCGacaCA-UGUUUGCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 48117 0.7 0.923885
Target:  5'- cCGAaaGGCUGUcccGCGAgGCGCGGCCcAGg -3'
miRNA:   3'- -GCU--UCGACAca-UGUU-UGCGCCGGuUC- -5'
6498 3' -50.7 NC_001847.1 + 35434 0.7 0.929469
Target:  5'- aGAuGCUGagcacgGUGCGgcgcGACGCGGCCGc- -3'
miRNA:   3'- gCUuCGACa-----CAUGU----UUGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 49572 0.7 0.929469
Target:  5'- uCGAcGGCgccGUugAGACGaCGGCCGAGg -3'
miRNA:   3'- -GCU-UCGacaCAugUUUGC-GCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 93786 0.7 0.934792
Target:  5'- cCGcuuGGCUG-GUuccgcGCGGccGCGCGGCCGAGu -3'
miRNA:   3'- -GCu--UCGACaCA-----UGUU--UGCGCCGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.