miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 3' -50.7 NC_001847.1 + 24760 0.68 0.974126
Target:  5'- --cGGCUGagGUGCGAcGCGCGGUCGu- -3'
miRNA:   3'- gcuUCGACa-CAUGUU-UGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 25252 0.75 0.711309
Target:  5'- -cGAGCUGccgGUAC-AGCGCGGUCAGGu -3'
miRNA:   3'- gcUUCGACa--CAUGuUUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 27763 0.69 0.944185
Target:  5'- gGggGCUGUgcggggcGUACAAuaaacuGCGCGGCgGGu -3'
miRNA:   3'- gCuuCGACA-------CAUGUU------UGCGCCGgUUc -5'
6498 3' -50.7 NC_001847.1 + 27971 0.71 0.89205
Target:  5'- gGucGCgGUGgagGCGGcCGCGGCCGGGg -3'
miRNA:   3'- gCuuCGaCACa--UGUUuGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 28095 0.67 0.983537
Target:  5'- gGggGCggcgGUGCccuCGgGGCCAGGa -3'
miRNA:   3'- gCuuCGaca-CAUGuuuGCgCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 28822 0.66 0.992492
Target:  5'- aCGcAGGCgcgGUgGUGCGGcugcuagaacGCGCGGCCGc- -3'
miRNA:   3'- -GC-UUCGa--CA-CAUGUU----------UGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 28875 0.66 0.987135
Target:  5'- gCGgcGCUGgg-GCGAguugcagagcACGCGGCCGc- -3'
miRNA:   3'- -GCuuCGACacaUGUU----------UGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 29291 0.68 0.96486
Target:  5'- gCGgcGCUGgcgGCAGAggcCGCGGCCGc- -3'
miRNA:   3'- -GCuuCGACacaUGUUU---GCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 29466 0.66 0.992492
Target:  5'- cCGAAGCgcc--GCc--CGCGGCCGAGg -3'
miRNA:   3'- -GCUUCGacacaUGuuuGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 29848 0.66 0.987135
Target:  5'- gGAGGCUGUGcugggcgagcUGCAcacgguagcuacGAcCGCGGCgGAGu -3'
miRNA:   3'- gCUUCGACAC----------AUGU------------UU-GCGCCGgUUC- -5'
6498 3' -50.7 NC_001847.1 + 31646 0.68 0.96131
Target:  5'- aCGAGuCUGUGcgaACAcACGCGGuCCGAGu -3'
miRNA:   3'- -GCUUcGACACa--UGUuUGCGCC-GGUUC- -5'
6498 3' -50.7 NC_001847.1 + 32181 0.69 0.949195
Target:  5'- gCGGAGCUugGcGCGcGCGCGGCgGAGg -3'
miRNA:   3'- -GCUUCGAcaCaUGUuUGCGCCGgUUC- -5'
6498 3' -50.7 NC_001847.1 + 32204 0.68 0.971261
Target:  5'- cCGAGGCcc---GCGGGCGgGGCCGGGg -3'
miRNA:   3'- -GCUUCGacacaUGUUUGCgCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 32434 0.67 0.983537
Target:  5'- uCGggGCgGUGgccCAGGCGCuGCCGc- -3'
miRNA:   3'- -GCuuCGaCACau-GUUUGCGcCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 32509 0.69 0.953483
Target:  5'- aGggGCUGgccgcGUAC--ACGCGGCUgucgGAGg -3'
miRNA:   3'- gCuuCGACa----CAUGuuUGCGCCGG----UUC- -5'
6498 3' -50.7 NC_001847.1 + 33025 0.74 0.75244
Target:  5'- gCGggGCgagGcGCGGACGCGGCgCAGGa -3'
miRNA:   3'- -GCuuCGacaCaUGUUUGCGCCG-GUUC- -5'
6498 3' -50.7 NC_001847.1 + 33043 0.73 0.819539
Target:  5'- -cGAGCUGgacGCGcuCGCGGCCGAGg -3'
miRNA:   3'- gcUUCGACacaUGUuuGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 33396 0.72 0.837173
Target:  5'- aGGAGCUGgacgccGUGCugaguGACGUGGCCGc- -3'
miRNA:   3'- gCUUCGACa-----CAUGu----UUGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 33823 0.75 0.711309
Target:  5'- gGAgcGGCUGUGcGCAGACGCGGgCGc- -3'
miRNA:   3'- gCU--UCGACACaUGUUUGCGCCgGUuc -5'
6498 3' -50.7 NC_001847.1 + 34733 0.67 0.983537
Target:  5'- uCGAGGCgaacuccGCcuucGACGCGGCCGAGc -3'
miRNA:   3'- -GCUUCGacaca--UGu---UUGCGCCGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.