miRNA display CGI


Results 1 - 20 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 3' -50.7 NC_001847.1 + 73 0.66 0.990095
Target:  5'- gGggGCgggGUGggggAUggGCGCGGagcgCGAGg -3'
miRNA:   3'- gCuuCGa--CACa---UGuuUGCGCCg---GUUC- -5'
6498 3' -50.7 NC_001847.1 + 3513 0.73 0.810437
Target:  5'- -cGAGCUucGUGUACGGGcCGUGGCCGAc -3'
miRNA:   3'- gcUUCGA--CACAUGUUU-GCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 3974 0.76 0.668993
Target:  5'- gCGAGGUgggccGUGaGCAcgccAGCGCGGCCAAGu -3'
miRNA:   3'- -GCUUCGa----CACaUGU----UUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 5147 0.66 0.992492
Target:  5'- aGAAGCagggGUGUGCGGGCcaggcaucgGCGGCgAu- -3'
miRNA:   3'- gCUUCGa---CACAUGUUUG---------CGCCGgUuc -5'
6498 3' -50.7 NC_001847.1 + 7196 0.68 0.968175
Target:  5'- uGGAGCgc-GUccuCGAGCGCGGCUggGc -3'
miRNA:   3'- gCUUCGacaCAu--GUUUGCGCCGGuuC- -5'
6498 3' -50.7 NC_001847.1 + 7239 0.75 0.721729
Target:  5'- aGcGGCUGgucggguggcUGUGCGGGCGCGGCgGGGg -3'
miRNA:   3'- gCuUCGAC----------ACAUGUUUGCGCCGgUUC- -5'
6498 3' -50.7 NC_001847.1 + 10466 0.69 0.949195
Target:  5'- gCGuuGCUG-GaGCGAAUGCaGGCCGAGc -3'
miRNA:   3'- -GCuuCGACaCaUGUUUGCG-CCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 10861 0.66 0.991359
Target:  5'- cCGAGGCgcg--GCGGGCGCGGgcgcCCAGGc -3'
miRNA:   3'- -GCUUCGacacaUGUUUGCGCC----GGUUC- -5'
6498 3' -50.7 NC_001847.1 + 12475 0.71 0.89205
Target:  5'- cCGcGGCUucccgcGUGgcgGCGGGgGCGGCCAAGa -3'
miRNA:   3'- -GCuUCGA------CACa--UGUUUgCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 14205 0.75 0.700815
Target:  5'- gCGggGCUGgcgGU-CAGGC-CGGCCGGGg -3'
miRNA:   3'- -GCuuCGACa--CAuGUUUGcGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 14490 1.11 0.006139
Target:  5'- cCGAAGCUGUGUACAAACGCGGCCAAGg -3'
miRNA:   3'- -GCUUCGACACAUGUUUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 14655 0.66 0.991359
Target:  5'- gCGgcGCUgacGUGaACAucgacGGCGCGGCCGGc -3'
miRNA:   3'- -GCuuCGA---CACaUGU-----UUGCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 15536 0.71 0.89205
Target:  5'- gCGGgcuGCUGgcgccgGUGCGcGCGCGGCCGu- -3'
miRNA:   3'- -GCUu--CGACa-----CAUGUuUGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 15807 0.67 0.981475
Target:  5'- gGAGGCggcgGUGUACGAaaACGaaGGCgAGGg -3'
miRNA:   3'- gCUUCGa---CACAUGUU--UGCg-CCGgUUC- -5'
6498 3' -50.7 NC_001847.1 + 17437 0.67 0.983537
Target:  5'- gCGgcGCcaaGUGUACAcgcccucgGugGCGGCCGu- -3'
miRNA:   3'- -GCuuCGa--CACAUGU--------UugCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 19325 0.69 0.944653
Target:  5'- cCGuGGCUGUuaacGCAAGCGCcgcGGCCGGGu -3'
miRNA:   3'- -GCuUCGACAca--UGUUUGCG---CCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 19728 0.67 0.983537
Target:  5'- aCGAGGUUGgc--CGGACGCGGCgGGc -3'
miRNA:   3'- -GCUUCGACacauGUUUGCGCCGgUUc -5'
6498 3' -50.7 NC_001847.1 + 20068 0.66 0.990095
Target:  5'- gGGAGCggcGUGgcgGCucccgcGGCGCGGCCcGGc -3'
miRNA:   3'- gCUUCGa--CACa--UGu-----UUGCGCCGGuUC- -5'
6498 3' -50.7 NC_001847.1 + 20587 0.68 0.973006
Target:  5'- aGAGgccGCUGUGUACcagcaugcccuCGCGGCUAAa -3'
miRNA:   3'- gCUU---CGACACAUGuuu--------GCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 24157 0.72 0.862069
Target:  5'- -uGAGCUuUGUGCGAACGCuggaGGCCAGc -3'
miRNA:   3'- gcUUCGAcACAUGUUUGCG----CCGGUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.