miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 3' -50.7 NC_001847.1 + 135017 0.68 0.971261
Target:  5'- cCGAGGCcc---GCGGGCGgGGCCGGGg -3'
miRNA:   3'- -GCUUCGacacaUGUUUGCgCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 134459 0.68 0.96131
Target:  5'- aCGAGuCUGUGcgaACAcACGCGGuCCGAGu -3'
miRNA:   3'- -GCUUcGACACa--UGUuUGCGCC-GGUUC- -5'
6498 3' -50.7 NC_001847.1 + 134202 0.66 0.992492
Target:  5'- uGGAGCg----GCGcGCGCGGgCCGAGg -3'
miRNA:   3'- gCUUCGacacaUGUuUGCGCC-GGUUC- -5'
6498 3' -50.7 NC_001847.1 + 133982 0.68 0.971261
Target:  5'- cCGggGCUGgGaGCGcGCGCGGCa--- -3'
miRNA:   3'- -GCuuCGACaCaUGUuUGCGCCGguuc -5'
6498 3' -50.7 NC_001847.1 + 130908 0.67 0.983537
Target:  5'- gGggGCggcgGUGCccuCGgGGCCAGGa -3'
miRNA:   3'- gCuuCGaca-CAUGuuuGCgCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 130784 0.71 0.89205
Target:  5'- gGucGCgGUGgagGCGGcCGCGGCCGGGg -3'
miRNA:   3'- gCuuCGaCACa--UGUUuGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 126970 0.72 0.862069
Target:  5'- -uGAGCUuUGUGCGAACGCuggaGGCCAGc -3'
miRNA:   3'- gcUUCGAcACAUGUUUGCG----CCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 125081 0.74 0.772349
Target:  5'- gGgcGCUGg--GCccGCGCGGCCAAGa -3'
miRNA:   3'- gCuuCGACacaUGuuUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 123481 0.68 0.96131
Target:  5'- gCGGgcucGGCUGgggccgccGCAAGCGgGGCCGGGg -3'
miRNA:   3'- -GCU----UCGACaca-----UGUUUGCgCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 119540 0.71 0.898931
Target:  5'- cCGGcaGGCUGg--GCAAggggcGCGCGGCCAGa -3'
miRNA:   3'- -GCU--UCGACacaUGUU-----UGCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 117831 0.66 0.987135
Target:  5'- aCGcGGCcGUGUGCc-GCGCcGCCGAGu -3'
miRNA:   3'- -GCuUCGaCACAUGuuUGCGcCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 117430 0.72 0.853989
Target:  5'- cCGAGccGCUGUacGUGCAcugcGGCGUGGCCGAc -3'
miRNA:   3'- -GCUU--CGACA--CAUGU----UUGCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 116983 0.66 0.991359
Target:  5'- ---cGCUGgg-GCGAGCGUGGCUGAu -3'
miRNA:   3'- gcuuCGACacaUGUUUGCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 116712 0.69 0.939853
Target:  5'- --cGGCUGgccgcgGCGcACGUGGCCAAGg -3'
miRNA:   3'- gcuUCGACaca---UGUuUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 111688 0.67 0.985421
Target:  5'- cCGAGGCg----GCGGACGCGGCg--- -3'
miRNA:   3'- -GCUUCGacacaUGUUUGCGCCGguuc -5'
6498 3' -50.7 NC_001847.1 + 110138 0.66 0.990095
Target:  5'- uGAAGCUGcUGgacuCGAugGCcauGGCCAu- -3'
miRNA:   3'- gCUUCGAC-ACau--GUUugCG---CCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 107222 0.66 0.987135
Target:  5'- cCGAgacGGCcGcccUGgccuccGCAAGCGCGGCCGGGc -3'
miRNA:   3'- -GCU---UCGaC---ACa-----UGUUUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 100130 0.67 0.985421
Target:  5'- gCGucAGCUGgcccACGucCGCGGCCGGGa -3'
miRNA:   3'- -GCu-UCGACaca-UGUuuGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 99859 0.7 0.911928
Target:  5'- gCGggGCUGcgcaGUACGuuaccucuucuAGCGCGGCUGAu -3'
miRNA:   3'- -GCuuCGACa---CAUGU-----------UUGCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 99791 0.66 0.990095
Target:  5'- gGggGCagcgccUGUgGUGCGGGgucggaGCGGCCGGGg -3'
miRNA:   3'- gCuuCG------ACA-CAUGUUUg-----CGCCGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.