Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6498 | 3' | -50.7 | NC_001847.1 | + | 48117 | 0.7 | 0.923885 |
Target: 5'- cCGAaaGGCUGUcccGCGAgGCGCGGCCcAGg -3' miRNA: 3'- -GCU--UCGACAca-UGUU-UGCGCCGGuUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 126970 | 0.72 | 0.862069 |
Target: 5'- -uGAGCUuUGUGCGAACGCuggaGGCCAGc -3' miRNA: 3'- gcUUCGAcACAUGUUUGCG----CCGGUUc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 74470 | 0.71 | 0.87754 |
Target: 5'- cCGGAcguGCUGUGccgcgagggcGCGGACGCGGCCGc- -3' miRNA: 3'- -GCUU---CGACACa---------UGUUUGCGCCGGUuc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 15536 | 0.71 | 0.89205 |
Target: 5'- gCGGgcuGCUGgcgccgGUGCGcGCGCGGCCGu- -3' miRNA: 3'- -GCUu--CGACa-----CAUGUuUGCGCCGGUuc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 130784 | 0.71 | 0.89205 |
Target: 5'- gGucGCgGUGgagGCGGcCGCGGCCGGGg -3' miRNA: 3'- gCuuCGaCACa--UGUUuGCGCCGGUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 12475 | 0.71 | 0.89205 |
Target: 5'- cCGcGGCUucccgcGUGgcgGCGGGgGCGGCCAAGa -3' miRNA: 3'- -GCuUCGA------CACa--UGUUUgCGCCGGUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 87919 | 0.71 | 0.898931 |
Target: 5'- gCGggGC-GUGggGCuGGGCGCGGCCGc- -3' miRNA: 3'- -GCuuCGaCACa-UG-UUUGCGCCGGUuc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 40448 | 0.71 | 0.905558 |
Target: 5'- uGAAGCgccaGUACuuGCGCGGCaCGGGc -3' miRNA: 3'- gCUUCGaca-CAUGuuUGCGCCG-GUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 68764 | 0.71 | 0.905558 |
Target: 5'- aCGAcGCUGUGguagGCGAGCuccaucgccgcgGCGGCCGc- -3' miRNA: 3'- -GCUuCGACACa---UGUUUG------------CGCCGGUuc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 33396 | 0.72 | 0.837173 |
Target: 5'- aGGAGCUGgacgccGUGCugaguGACGUGGCCGc- -3' miRNA: 3'- gCUUCGACa-----CAUGu----UUGCGCCGGUuc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 33043 | 0.73 | 0.819539 |
Target: 5'- -cGAGCUGgacGCGcuCGCGGCCGAGg -3' miRNA: 3'- gcUUCGACacaUGUuuGCGCCGGUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 75198 | 0.73 | 0.819539 |
Target: 5'- aCGggGuCUGUcUGCAGGCGCacggucagcgaGGCCAGGu -3' miRNA: 3'- -GCuuC-GACAcAUGUUUGCG-----------CCGGUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 86175 | 0.77 | 0.615426 |
Target: 5'- gCGGAGCUacGUGaugACGGGCGCGGCCu-- -3' miRNA: 3'- -GCUUCGA--CACa--UGUUUGCGCCGGuuc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 3974 | 0.76 | 0.668993 |
Target: 5'- gCGAGGUgggccGUGaGCAcgccAGCGCGGCCAAGu -3' miRNA: 3'- -GCUUCGa----CACaUGU----UUGCGCCGGUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 33823 | 0.75 | 0.711309 |
Target: 5'- gGAgcGGCUGUGcGCAGACGCGGgCGc- -3' miRNA: 3'- gCU--UCGACACaUGUUUGCGCCgGUuc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 25252 | 0.75 | 0.711309 |
Target: 5'- -cGAGCUGccgGUAC-AGCGCGGUCAGGu -3' miRNA: 3'- gcUUCGACa--CAUGuUUGCGCCGGUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 7239 | 0.75 | 0.721729 |
Target: 5'- aGcGGCUGgucggguggcUGUGCGGGCGCGGCgGGGg -3' miRNA: 3'- gCuUCGAC----------ACAUGUUUGCGCCGgUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 36840 | 0.74 | 0.762458 |
Target: 5'- gGggGCUGgcggacGUGCGcucGGCgGCGGCCGAGc -3' miRNA: 3'- gCuuCGACa-----CAUGU---UUG-CGCCGGUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 42015 | 0.73 | 0.791709 |
Target: 5'- aCGAAGCUGcgccGUGCcGGCGCGGCg--- -3' miRNA: 3'- -GCUUCGACa---CAUGuUUGCGCCGguuc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 3513 | 0.73 | 0.810437 |
Target: 5'- -cGAGCUucGUGUACGGGcCGUGGCCGAc -3' miRNA: 3'- gcUUCGA--CACAUGUUU-GCGCCGGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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