miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 3' -50.7 NC_001847.1 + 134202 0.66 0.992492
Target:  5'- uGGAGCg----GCGcGCGCGGgCCGAGg -3'
miRNA:   3'- gCUUCGacacaUGUuUGCGCC-GGUUC- -5'
6498 3' -50.7 NC_001847.1 + 111688 0.67 0.985421
Target:  5'- cCGAGGCg----GCGGACGCGGCg--- -3'
miRNA:   3'- -GCUUCGacacaUGUUUGCGCCGguuc -5'
6498 3' -50.7 NC_001847.1 + 69475 0.67 0.983537
Target:  5'- aCGGccAGCUGcgcgaugGUGCGGgcgcgcACGCGGCCGu- -3'
miRNA:   3'- -GCU--UCGACa------CAUGUU------UGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 14490 1.11 0.006139
Target:  5'- cCGAAGCUGUGUACAAACGCGGCCAAGg -3'
miRNA:   3'- -GCUUCGACACAUGUUUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 43549 0.66 0.991359
Target:  5'- aGAAGCgccgccGCGAGCGCcgcgaggauGGCCGAGg -3'
miRNA:   3'- gCUUCGacaca-UGUUUGCG---------CCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 42534 0.66 0.991359
Target:  5'- gGAaaAGCUGcucgGUGagggcgaGGACGCGGCCGc- -3'
miRNA:   3'- gCU--UCGACa---CAUg------UUUGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 116983 0.66 0.991359
Target:  5'- ---cGCUGgg-GCGAGCGUGGCUGAu -3'
miRNA:   3'- gcuuCGACacaUGUUUGCGCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 110138 0.66 0.990095
Target:  5'- uGAAGCUGcUGgacuCGAugGCcauGGCCAu- -3'
miRNA:   3'- gCUUCGAC-ACau--GUUugCG---CCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 37293 0.66 0.989689
Target:  5'- uGGAGCauUGUAUAAggcgcgcgcagcccGCGCGcGCCGAGc -3'
miRNA:   3'- gCUUCGacACAUGUU--------------UGCGC-CGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 56183 0.66 0.987135
Target:  5'- cCGAGGCUGc--GCGAGCGCcagccugcggGGCaCAGGg -3'
miRNA:   3'- -GCUUCGACacaUGUUUGCG----------CCG-GUUC- -5'
6498 3' -50.7 NC_001847.1 + 117831 0.66 0.987135
Target:  5'- aCGcGGCcGUGUGCc-GCGCcGCCGAGu -3'
miRNA:   3'- -GCuUCGaCACAUGuuUGCGcCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 98080 0.66 0.989689
Target:  5'- uGAAGUUuaccagGUGCAugaaggcgcccaugAGCGCGGCCAc- -3'
miRNA:   3'- gCUUCGAca----CAUGU--------------UUGCGCCGGUuc -5'
6498 3' -50.7 NC_001847.1 + 52881 0.66 0.992492
Target:  5'- -cGAGCgc-GUACAGGCGaUGGCCAGu -3'
miRNA:   3'- gcUUCGacaCAUGUUUGC-GCCGGUUc -5'
6498 3' -50.7 NC_001847.1 + 107222 0.66 0.987135
Target:  5'- cCGAgacGGCcGcccUGgccuccGCAAGCGCGGCCGGGc -3'
miRNA:   3'- -GCU---UCGaC---ACa-----UGUUUGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 89032 0.66 0.992166
Target:  5'- aCGAcGCcGUGUGCGcgcugggcgacggcAugGCGcGCCGGGu -3'
miRNA:   3'- -GCUuCGaCACAUGU--------------UugCGC-CGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 20068 0.66 0.990095
Target:  5'- gGGAGCggcGUGgcgGCucccgcGGCGCGGCCcGGc -3'
miRNA:   3'- gCUUCGa--CACa--UGu-----UUGCGCCGGuUC- -5'
6498 3' -50.7 NC_001847.1 + 84426 0.66 0.987135
Target:  5'- cCGGugcAGCgucgUGUGUGCGcACGCGuGCCGGu -3'
miRNA:   3'- -GCU---UCG----ACACAUGUuUGCGC-CGGUUc -5'
6498 3' -50.7 NC_001847.1 + 100130 0.67 0.985421
Target:  5'- gCGucAGCUGgcccACGucCGCGGCCGGGa -3'
miRNA:   3'- -GCu-UCGACaca-UGUuuGCGCCGGUUC- -5'
6498 3' -50.7 NC_001847.1 + 94154 0.66 0.991359
Target:  5'- cCGGAGCagGUG----AGCGCGGCCcGGc -3'
miRNA:   3'- -GCUUCGa-CACauguUUGCGCCGGuUC- -5'
6498 3' -50.7 NC_001847.1 + 49527 0.66 0.991359
Target:  5'- gCGggGCUccccUGCuucuACGCGGCCAu- -3'
miRNA:   3'- -GCuuCGAcac-AUGuu--UGCGCCGGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.