miRNA display CGI


Results 41 - 60 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 16846 0.7 0.295649
Target:  5'- aUCggGGCGGCGCUCGagGCgaGCGGg -3'
miRNA:   3'- cAGagCCGCCGCGAGCgaCGggCGCC- -5'
6498 5' -64.1 NC_001847.1 + 17213 0.67 0.465884
Target:  5'- -gCUCuGCGGCGCUuaCGUUGCCCcacaccGCGu -3'
miRNA:   3'- caGAGcCGCCGCGA--GCGACGGG------CGCc -5'
6498 5' -64.1 NC_001847.1 + 17310 0.7 0.302235
Target:  5'- -aCUCGGCGGCGCggcacacggcCGCguaGCCgGCGc -3'
miRNA:   3'- caGAGCCGCCGCGa---------GCGa--CGGgCGCc -5'
6498 5' -64.1 NC_001847.1 + 17670 0.67 0.457068
Target:  5'- --gUCGGCGGC--UCGCgGUCCGcCGGg -3'
miRNA:   3'- cagAGCCGCCGcgAGCGaCGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 17788 0.73 0.220035
Target:  5'- -cUUCGGCGGgGCuUUGCUcGgCCGCGGg -3'
miRNA:   3'- caGAGCCGCCgCG-AGCGA-CgGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 18208 0.7 0.328993
Target:  5'- gGUCUCGGgcuggcggucucuCGGCGgUCG-UGCgCGCGGg -3'
miRNA:   3'- -CAGAGCC-------------GCCGCgAGCgACGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 18232 0.73 0.209984
Target:  5'- cUCUCGGCGcGUGCUCGCgugGCgcuugaagUUGCGGg -3'
miRNA:   3'- cAGAGCCGC-CGCGAGCGa--CG--------GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 18387 0.72 0.235878
Target:  5'- -cCUCGGCGuC-CUCGCccugcggGCCCGCGGg -3'
miRNA:   3'- caGAGCCGCcGcGAGCGa------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 18648 0.72 0.241367
Target:  5'- -gCUCGGCGaGCGCgaCGCcgUGCCCGCc- -3'
miRNA:   3'- caGAGCCGC-CGCGa-GCG--ACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 18957 0.69 0.35074
Target:  5'- cGUCcgggCGGCGacgaccaGCGCggcCGCggcGCCCGCGGc -3'
miRNA:   3'- -CAGa---GCCGC-------CGCGa--GCGa--CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 19272 0.67 0.483773
Target:  5'- ---cCGGCGGCGCagCGuCUGUgCgGCGGg -3'
miRNA:   3'- cagaGCCGCCGCGa-GC-GACGgG-CGCC- -5'
6498 5' -64.1 NC_001847.1 + 19640 0.68 0.414398
Target:  5'- cGUCggCGcGCGGcCGCUUGCggGCCCGgccgcCGGa -3'
miRNA:   3'- -CAGa-GC-CGCC-GCGAGCGa-CGGGC-----GCC- -5'
6498 5' -64.1 NC_001847.1 + 20050 0.76 0.129666
Target:  5'- -cCUgGGCGcgggcaaaaauGCGCUCGCUGCCUGCGc -3'
miRNA:   3'- caGAgCCGC-----------CGCGAGCGACGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 20083 0.7 0.308932
Target:  5'- -gCUCccGCGGCGCggcccggccaUCGCUaGCCCGUGGc -3'
miRNA:   3'- caGAGc-CGCCGCG----------AGCGA-CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 20815 0.74 0.177877
Target:  5'- -cUUCGGCGGCGCuuUCGCUcGCCucuuacgcgCGCGGu -3'
miRNA:   3'- caGAGCCGCCGCG--AGCGA-CGG---------GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 20862 0.67 0.457068
Target:  5'- aGUCUgcgcugCGGCGGCGCUCuuuauacuggGCggacGCCCccgcaGCGGc -3'
miRNA:   3'- -CAGA------GCCGCCGCGAG----------CGa---CGGG-----CGCC- -5'
6498 5' -64.1 NC_001847.1 + 21615 0.67 0.474786
Target:  5'- -aCUCgcuGGCGGCGCUUG--GCCggCGCGGg -3'
miRNA:   3'- caGAG---CCGCCGCGAGCgaCGG--GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 21967 0.7 0.322665
Target:  5'- -gCUgGGCcgcGGCGCcggUUGCcGCCCGCGGu -3'
miRNA:   3'- caGAgCCG---CCGCG---AGCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 24330 0.68 0.406161
Target:  5'- ---gCGGUGGCGCgccaCGCcGCgCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGa---GCGaCGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 25133 0.66 0.53926
Target:  5'- ---gCGGCGGcCGCg-GCUGCCUaaagccgaaGCGGa -3'
miRNA:   3'- cagaGCCGCC-GCGagCGACGGG---------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.