miRNA display CGI


Results 21 - 40 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 6754 0.67 0.491931
Target:  5'- cGUCUgCGGUgcggccggugcgaGGCGC-CaGCUGCuCCGUGGc -3'
miRNA:   3'- -CAGA-GCCG-------------CCGCGaG-CGACG-GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 6843 0.68 0.398028
Target:  5'- -cCUCGGCgaGGUGCUCGagcagcacGCgCGCGGg -3'
miRNA:   3'- caGAGCCG--CCGCGAGCga------CGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 6858 0.73 0.195652
Target:  5'- ----gGGCGGCGCUUGCUuugGCCCGCc- -3'
miRNA:   3'- cagagCCGCCGCGAGCGA---CGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 6901 0.67 0.492841
Target:  5'- --gUCGGCGaGCGCgcgCGC-GCCCuGCGc -3'
miRNA:   3'- cagAGCCGC-CGCGa--GCGaCGGG-CGCc -5'
6498 5' -64.1 NC_001847.1 + 6965 0.8 0.062459
Target:  5'- gGUCgCGGCGGCGCUUcC-GCCCGCGGg -3'
miRNA:   3'- -CAGaGCCGCCGCGAGcGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 7136 0.7 0.332547
Target:  5'- gGUCUUgcccccuccccuucgGGCGugucGCGCUCGCUcGCCCggGCGGu -3'
miRNA:   3'- -CAGAG---------------CCGC----CGCGAGCGA-CGGG--CGCC- -5'
6498 5' -64.1 NC_001847.1 + 10051 0.67 0.483773
Target:  5'- cGUCaCGGCcgacacGCGCgCGCUGCgCCGCGc -3'
miRNA:   3'- -CAGaGCCGc-----CGCGaGCGACG-GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 11569 0.66 0.520493
Target:  5'- gGUC-CGGCccCGCUCGCggcgGCCC-CGGc -3'
miRNA:   3'- -CAGaGCCGccGCGAGCGa---CGGGcGCC- -5'
6498 5' -64.1 NC_001847.1 + 11721 0.66 0.529846
Target:  5'- -aUUCGGCGGCaCguaugacgCGCUGCUgGgGGa -3'
miRNA:   3'- caGAGCCGCCGcGa-------GCGACGGgCgCC- -5'
6498 5' -64.1 NC_001847.1 + 13130 0.68 0.439711
Target:  5'- ----gGGCGGCGCcgCGCcGCcugCCGCGGc -3'
miRNA:   3'- cagagCCGCCGCGa-GCGaCG---GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 13915 0.67 0.457068
Target:  5'- ---gUGGCuggGGCGCUCGgUGCCgcgcCGCGGc -3'
miRNA:   3'- cagaGCCG---CCGCGAGCgACGG----GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 14063 0.66 0.548731
Target:  5'- uUCgCGGcCGGUGCUUggGCcGCUCGUGGa -3'
miRNA:   3'- cAGaGCC-GCCGCGAG--CGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 14306 0.71 0.258477
Target:  5'- cGUCgCGGCccCGCUccCGCUGCUCGCGGu -3'
miRNA:   3'- -CAGaGCCGccGCGA--GCGACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 14467 0.68 0.439711
Target:  5'- -gCUCGGCGuGCGCUCcaacGCcGUCC-CGGa -3'
miRNA:   3'- caGAGCCGC-CGCGAG----CGaCGGGcGCC- -5'
6498 5' -64.1 NC_001847.1 + 14524 1.09 0.000537
Target:  5'- cGUCUCGGCGGCGCUCGCUGCCCGCGGu -3'
miRNA:   3'- -CAGAGCCGCCGCGAGCGACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 14645 0.74 0.165502
Target:  5'- -gCUCGcGCGcCGCUCGCUGCgaGCGGg -3'
miRNA:   3'- caGAGC-CGCcGCGAGCGACGggCGCC- -5'
6498 5' -64.1 NC_001847.1 + 14649 0.66 0.517699
Target:  5'- -cCUCGaGCGGCGCUgacgugaacaucgaCgGCgcgGCCgGCGGc -3'
miRNA:   3'- caGAGC-CGCCGCGA--------------G-CGa--CGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 15522 0.68 0.439711
Target:  5'- -gCUCGGCGGgagcCGCggGCUGCUgGCGc -3'
miRNA:   3'- caGAGCCGCC----GCGagCGACGGgCGCc -5'
6498 5' -64.1 NC_001847.1 + 15566 0.71 0.258477
Target:  5'- cGUCgggCcGCGGcCGC-CGCUGCCCGCa- -3'
miRNA:   3'- -CAGa--GcCGCC-GCGaGCGACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 16588 0.68 0.398028
Target:  5'- gGUCggGGCGGCGUggGgUGCCgGCGa -3'
miRNA:   3'- -CAGagCCGCCGCGagCgACGGgCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.