miRNA display CGI


Results 21 - 40 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 34519 0.66 0.529846
Target:  5'- ---gCGGaCGGCGCcggcgaugCGCcGCCCGcCGGg -3'
miRNA:   3'- cagaGCC-GCCGCGa-------GCGaCGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 133892 0.66 0.505665
Target:  5'- -gCUCGGCGcGcCGCU-GCggccgguguaccugGCCUGCGGg -3'
miRNA:   3'- caGAGCCGC-C-GCGAgCGa-------------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 47553 0.66 0.520493
Target:  5'- ---aCGGCgGGCGCggGgaGCCCgGCGGc -3'
miRNA:   3'- cagaGCCG-CCGCGagCgaCGGG-CGCC- -5'
6498 5' -64.1 NC_001847.1 + 107252 0.66 0.529846
Target:  5'- -cCUCGGCcucGGCGCacucCGCgacGUCCGCGu -3'
miRNA:   3'- caGAGCCG---CCGCGa---GCGa--CGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 119260 0.66 0.520493
Target:  5'- ---aUGGCGGCGCcCGCgcgGCUCGUcgaGGg -3'
miRNA:   3'- cagaGCCGCCGCGaGCGa--CGGGCG---CC- -5'
6498 5' -64.1 NC_001847.1 + 59558 0.66 0.53926
Target:  5'- ----gGGCGGCGggggCGgUGCCgGCGGa -3'
miRNA:   3'- cagagCCGCCGCga--GCgACGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 65914 0.66 0.53926
Target:  5'- uUUUCGccgucGCGGCGUcggCGUUcCCCGCGGa -3'
miRNA:   3'- cAGAGC-----CGCCGCGa--GCGAcGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 105573 0.66 0.53926
Target:  5'- ---gCGGCGGCGCcggCGCcggcgcccccGCCgGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGa--GCGa---------CGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 105352 0.66 0.511204
Target:  5'- ---cCGGCGGCGCUCccGCcGCCgGgcCGGg -3'
miRNA:   3'- cagaGCCGCCGCGAG--CGaCGGgC--GCC- -5'
6498 5' -64.1 NC_001847.1 + 32708 0.66 0.51213
Target:  5'- cGUCUCGGC-GCGCUUcauggaGCgccucucggccuccgGCCgGCGGc -3'
miRNA:   3'- -CAGAGCCGcCGCGAG------CGa--------------CGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 96997 0.66 0.528908
Target:  5'- cUCggGGCGGCGCgccgcgcgaagacUCGgUGCCCgGCGc -3'
miRNA:   3'- cAGagCCGCCGCG-------------AGCgACGGG-CGCc -5'
6498 5' -64.1 NC_001847.1 + 29443 0.66 0.501986
Target:  5'- ---cUGG-GGCGUggCGCcGCCCGCGGc -3'
miRNA:   3'- cagaGCCgCCGCGa-GCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 94162 0.66 0.520493
Target:  5'- cUCgCGGCGGCuGCUgggCGCgGCCgccucgCGCGGg -3'
miRNA:   3'- cAGaGCCGCCG-CGA---GCGaCGG------GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 32759 0.66 0.529846
Target:  5'- uUCgcgGGCGGCGCuUCGCgacgGCCgGCc- -3'
miRNA:   3'- cAGag-CCGCCGCG-AGCGa---CGGgCGcc -5'
6498 5' -64.1 NC_001847.1 + 35893 0.66 0.529846
Target:  5'- aGUCggcggCGGCGGCGUggGacgGCgCGUGGg -3'
miRNA:   3'- -CAGa----GCCGCCGCGagCga-CGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 53711 0.66 0.520493
Target:  5'- aGUCUgugggccggCGGCuGGCGCUgUGC-GCCUGCGa -3'
miRNA:   3'- -CAGA---------GCCG-CCGCGA-GCGaCGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 85733 0.66 0.529846
Target:  5'- ---aCGGCGGCagGCUgCGCggaGCCCGCc- -3'
miRNA:   3'- cagaGCCGCCG--CGA-GCGa--CGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 127946 0.66 0.53926
Target:  5'- ---gCGGCGGcCGCg-GCUGCCUaaagccgaaGCGGa -3'
miRNA:   3'- cagaGCCGCC-GCGagCGACGGG---------CGCC- -5'
6498 5' -64.1 NC_001847.1 + 34281 0.66 0.501986
Target:  5'- ---gCGGCugGGCGC-CGC-GCUCGCGGc -3'
miRNA:   3'- cagaGCCG--CCGCGaGCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 133072 0.66 0.529846
Target:  5'- ---gCGG-GGCGCUCGCcGCCaccgcuGCGGc -3'
miRNA:   3'- cagaGCCgCCGCGAGCGaCGGg-----CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.