miRNA display CGI


Results 1 - 20 of 420 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 87839 0.66 0.501986
Target:  5'- aUCaCGcCGGCGggCGUgaugGCCCGCGGg -3'
miRNA:   3'- cAGaGCcGCCGCgaGCGa---CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 83469 0.66 0.501986
Target:  5'- ---aCGGCGcGCGCguaCGCcGCCCuguuGCGGg -3'
miRNA:   3'- cagaGCCGC-CGCGa--GCGaCGGG----CGCC- -5'
6498 5' -64.1 NC_001847.1 + 11569 0.66 0.520493
Target:  5'- gGUC-CGGCccCGCUCGCggcgGCCC-CGGc -3'
miRNA:   3'- -CAGaGCCGccGCGAGCGa---CGGGcGCC- -5'
6498 5' -64.1 NC_001847.1 + 35985 0.66 0.520493
Target:  5'- ----aGGCGcGCGCagccgCGCUGCaggcggCCGCGGg -3'
miRNA:   3'- cagagCCGC-CGCGa----GCGACG------GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 105352 0.66 0.511204
Target:  5'- ---cCGGCGGCGCUCccGCcGCCgGgcCGGg -3'
miRNA:   3'- cagaGCCGCCGCGAG--CGaCGGgC--GCC- -5'
6498 5' -64.1 NC_001847.1 + 133763 0.66 0.501986
Target:  5'- ---cCGGCaGCGCgUGCUGCCgGCGc -3'
miRNA:   3'- cagaGCCGcCGCGaGCGACGGgCGCc -5'
6498 5' -64.1 NC_001847.1 + 76292 0.66 0.511204
Target:  5'- ---cUGGCGcGCGgaCGCaGCgCCGCGGg -3'
miRNA:   3'- cagaGCCGC-CGCgaGCGaCG-GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 133892 0.66 0.505665
Target:  5'- -gCUCGGCGcGcCGCU-GCggccgguguaccugGCCUGCGGg -3'
miRNA:   3'- caGAGCCGC-C-GCGAgCGa-------------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 87091 0.66 0.501986
Target:  5'- uUCgCGGCGcGCGCggacucgCGCUGUuuCCGCGc -3'
miRNA:   3'- cAGaGCCGC-CGCGa------GCGACG--GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 26270 0.66 0.501986
Target:  5'- cGUCgcaagacUGGUaGCGCUCGCUGCggcaagugacUCGCGGc -3'
miRNA:   3'- -CAGa------GCCGcCGCGAGCGACG----------GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 28872 0.66 0.511204
Target:  5'- ---cCGGCGGCGCUggggcgaGUUGCagagcaCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGAg------CGACGg-----GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 96333 0.66 0.501986
Target:  5'- uGUCggugggCGGCGG-GCUggcgugcgacgCGCUGCCgGCaGGg -3'
miRNA:   3'- -CAGa-----GCCGCCgCGA-----------GCGACGGgCG-CC- -5'
6498 5' -64.1 NC_001847.1 + 34281 0.66 0.501986
Target:  5'- ---gCGGCugGGCGC-CGC-GCUCGCGGc -3'
miRNA:   3'- cagaGCCG--CCGCGaGCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 25349 0.66 0.511204
Target:  5'- cGUCcacgUGGCGGCGgUCGCgGCgauCCGCa- -3'
miRNA:   3'- -CAGa---GCCGCCGCgAGCGaCG---GGCGcc -5'
6498 5' -64.1 NC_001847.1 + 85245 0.66 0.501986
Target:  5'- ---cCGGCGGCGCcaggugCGCgagguaggUGgCCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGa-----GCG--------ACgGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 115779 0.66 0.501986
Target:  5'- -gCUCGGCcagaGCGUUCGCggaGCCgcUGCGGc -3'
miRNA:   3'- caGAGCCGc---CGCGAGCGa--CGG--GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 49282 0.66 0.519561
Target:  5'- -gCUCGccGCGcggagccGCGaCUCGCUGCUgGCGGu -3'
miRNA:   3'- caGAGC--CGC-------CGC-GAGCGACGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 14649 0.66 0.517699
Target:  5'- -cCUCGaGCGGCGCUgacgugaacaucgaCgGCgcgGCCgGCGGc -3'
miRNA:   3'- caGAGC-CGCCGCGA--------------G-CGa--CGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 32708 0.66 0.51213
Target:  5'- cGUCUCGGC-GCGCUUcauggaGCgccucucggccuccgGCCgGCGGc -3'
miRNA:   3'- -CAGAGCCGcCGCGAG------CGa--------------CGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 29443 0.66 0.501986
Target:  5'- ---cUGG-GGCGUggCGCcGCCCGCGGc -3'
miRNA:   3'- cagaGCCgCCGCGa-GCGaCGGGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.