miRNA display CGI


Results 1 - 20 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 65527 0.73 0.195652
Target:  5'- cUCUCcgcgcucaccgaGGgGGCGCUCGCggacggcuacgUGCUCGCGGa -3'
miRNA:   3'- cAGAG------------CCgCCGCGAGCG-----------ACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 31647 0.74 0.177877
Target:  5'- uGUUUCGGCGG-GCcCGgaGCCCGCGc -3'
miRNA:   3'- -CAGAGCCGCCgCGaGCgaCGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 20815 0.74 0.177877
Target:  5'- -cUUCGGCGGCGCuuUCGCUcGCCucuuacgcgCGCGGu -3'
miRNA:   3'- caGAGCCGCCGCG--AGCGA-CGG---------GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 75098 0.74 0.182182
Target:  5'- aUCgUCGGCGGCGCcccggCGCuUGCCCGagaaGGc -3'
miRNA:   3'- cAG-AGCCGCCGCGa----GCG-ACGGGCg---CC- -5'
6498 5' -64.1 NC_001847.1 + 78643 0.74 0.182182
Target:  5'- uUUUUGGCGGCGCggUCGCgcgcGCCUGCGu -3'
miRNA:   3'- cAGAGCCGCCGCG--AGCGa---CGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 81542 0.74 0.186578
Target:  5'- -gUUCGGCGGCcgaGCUCGCcgGCCCcgcgcagcugcGCGGg -3'
miRNA:   3'- caGAGCCGCCG---CGAGCGa-CGGG-----------CGCC- -5'
6498 5' -64.1 NC_001847.1 + 97833 0.74 0.186578
Target:  5'- -gCUCGGCGcGCGCggGCUGCgCGCGc -3'
miRNA:   3'- caGAGCCGC-CGCGagCGACGgGCGCc -5'
6498 5' -64.1 NC_001847.1 + 43117 0.74 0.186578
Target:  5'- ---cCGGCGGUGCccgcagacggCGCggGCCCGCGGg -3'
miRNA:   3'- cagaGCCGCCGCGa---------GCGa-CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 86708 0.73 0.191068
Target:  5'- -cCUCGGUgcuGGUGCUcaacuccaCGCgGCCCGCGGa -3'
miRNA:   3'- caGAGCCG---CCGCGA--------GCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 37573 0.74 0.173663
Target:  5'- ---gCGGCGGCGCUggcCGCUGCggCUGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGA---GCGACG--GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 80644 0.74 0.169539
Target:  5'- ---aCGGCGGCGCUCGCgggagacccgGCgCCGgGGa -3'
miRNA:   3'- cagaGCCGCCGCGAGCGa---------CG-GGCgCC- -5'
6498 5' -64.1 NC_001847.1 + 54589 0.75 0.150206
Target:  5'- -gCUgGGCGGCGCUgGCggcgcgcGCCCGCGc -3'
miRNA:   3'- caGAgCCGCCGCGAgCGa------CGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 87500 0.78 0.101117
Target:  5'- -gCUCGGCGGCuGCUUGCacgUGCCCGCc- -3'
miRNA:   3'- caGAGCCGCCG-CGAGCG---ACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 75552 0.77 0.106307
Target:  5'- aUCUCGGCGGCcga-GCUGCCCGUGa -3'
miRNA:   3'- cAGAGCCGCCGcgagCGACGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 65738 0.77 0.108453
Target:  5'- ----gGGCGGCGCUCGagagcguggugGCCCGCGGg -3'
miRNA:   3'- cagagCCGCCGCGAGCga---------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 73239 0.77 0.113712
Target:  5'- uGUCUCGGCGGaccucgcguacuucCGCUCGCcgUGCaacccCCGCGGg -3'
miRNA:   3'- -CAGAGCCGCC--------------GCGAGCG--ACG-----GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 69376 0.76 0.120397
Target:  5'- gGUCUuugCGGCGGUGg-CGCUGCCgGCGGc -3'
miRNA:   3'- -CAGA---GCCGCCGCgaGCGACGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 20050 0.76 0.129666
Target:  5'- -cCUgGGCGcgggcaaaaauGCGCUCGCUGCCUGCGc -3'
miRNA:   3'- caGAgCCGC-----------CGCGAGCGACGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 37007 0.76 0.132899
Target:  5'- ---gCGGCGGCGCgcucgaGCUgacGCCCGCGGa -3'
miRNA:   3'- cagaGCCGCCGCGag----CGA---CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 89937 0.76 0.135873
Target:  5'- cUCgCGGCGGCGCUCGCgcugcgagacgacUGCCagcgCGCGGc -3'
miRNA:   3'- cAGaGCCGCCGCGAGCG-------------ACGG----GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.