miRNA display CGI


Results 1 - 20 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 59615 0.66 0.548731
Target:  5'- --aUCGcGCGGUGCgccgugCGCUGCUuCGCGc -3'
miRNA:   3'- cagAGC-CGCCGCGa-----GCGACGG-GCGCc -5'
6498 5' -64.1 NC_001847.1 + 116282 0.66 0.529846
Target:  5'- -gCUCGGCGaggcaGCGUgcccCGCUGaCCCGUGcGg -3'
miRNA:   3'- caGAGCCGC-----CGCGa---GCGAC-GGGCGC-C- -5'
6498 5' -64.1 NC_001847.1 + 74287 0.66 0.529846
Target:  5'- -cCUCGcGCuggacgcccuGGCGCcgCGCaGCgCCGCGGg -3'
miRNA:   3'- caGAGC-CG----------CCGCGa-GCGaCG-GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 14524 1.09 0.000537
Target:  5'- cGUCUCGGCGGCGCUCGCUGCCCGCGGu -3'
miRNA:   3'- -CAGAGCCGCCGCGAGCGACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 74588 0.66 0.548731
Target:  5'- uGUCUgGGCuucGUGC-CGCUGUucaccuCCGCGGu -3'
miRNA:   3'- -CAGAgCCGc--CGCGaGCGACG------GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 42484 0.66 0.548731
Target:  5'- ----gGGCGGCGCgccgaagCGCUGCgggcgaaaCCGcCGGg -3'
miRNA:   3'- cagagCCGCCGCGa------GCGACG--------GGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 29481 0.66 0.548731
Target:  5'- -cCUgGGCgcuGGCGCgcgCGCUguucaGCCCGcCGGc -3'
miRNA:   3'- caGAgCCG---CCGCGa--GCGA-----CGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 101868 0.66 0.548731
Target:  5'- gGUCgCGGaGGaGCUCGCcuuUGCgCGCGGa -3'
miRNA:   3'- -CAGaGCCgCCgCGAGCG---ACGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 90020 0.66 0.53926
Target:  5'- -cCUCGGCGucugucGCGCUCuGUUGUCUGCc- -3'
miRNA:   3'- caGAGCCGC------CGCGAG-CGACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 2760 0.66 0.53926
Target:  5'- ---gCGGCGGCGCcggCGCcggcgcccccGCCgGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGa--GCGa---------CGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 93515 0.66 0.53926
Target:  5'- ---cCGGCGcGcCGCUCGCgGCCaucacgGCGGa -3'
miRNA:   3'- cagaGCCGC-C-GCGAGCGaCGGg-----CGCC- -5'
6498 5' -64.1 NC_001847.1 + 102372 0.66 0.53926
Target:  5'- cGUCcagCGGcCGGCcgucGCgaagCGCcGCCCGCGa -3'
miRNA:   3'- -CAGa--GCC-GCCG----CGa---GCGaCGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 106798 0.66 0.548731
Target:  5'- ----gGGCGGaugacgGCcgCGCUGCCCGcCGGc -3'
miRNA:   3'- cagagCCGCCg-----CGa-GCGACGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 25133 0.66 0.53926
Target:  5'- ---gCGGCGGcCGCg-GCUGCCUaaagccgaaGCGGa -3'
miRNA:   3'- cagaGCCGCC-GCGagCGACGGG---------CGCC- -5'
6498 5' -64.1 NC_001847.1 + 100996 0.66 0.548731
Target:  5'- -cCUCGcGCaGcGCGCUCGCcGCggcggccaCCGCGGc -3'
miRNA:   3'- caGAGC-CG-C-CGCGAGCGaCG--------GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 61301 0.66 0.548731
Target:  5'- ---gCGGCGGCGUuuuuaugCGCggGUgCGCGGg -3'
miRNA:   3'- cagaGCCGCCGCGa------GCGa-CGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 4553 0.66 0.53926
Target:  5'- cGUCUcCGGCGcCGUcguccUCGCUGCucuCCGCGu -3'
miRNA:   3'- -CAGA-GCCGCcGCG-----AGCGACG---GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 105679 0.66 0.529846
Target:  5'- -cCUCGGCcgcgGGCGg-CGCUucGgCCGCGGg -3'
miRNA:   3'- caGAGCCG----CCGCgaGCGA--CgGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 88097 0.66 0.548731
Target:  5'- uGUCggCGGUGGCGCg-GCUGgCCGgaaucaCGGu -3'
miRNA:   3'- -CAGa-GCCGCCGCGagCGACgGGC------GCC- -5'
6498 5' -64.1 NC_001847.1 + 41346 0.66 0.548731
Target:  5'- -aCUCGGC--CGC-CGCgGCCgCGCGGa -3'
miRNA:   3'- caGAGCCGccGCGaGCGaCGG-GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.