miRNA display CGI


Results 1 - 20 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 14524 1.09 0.000537
Target:  5'- cGUCUCGGCGGCGCUCGCUGCCCGCGGu -3'
miRNA:   3'- -CAGAGCCGCCGCGAGCGACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 81767 0.82 0.0447
Target:  5'- -aCUCGGCaggcGCGCUCGCggUGCCCGCGGc -3'
miRNA:   3'- caGAGCCGc---CGCGAGCG--ACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 6965 0.8 0.062459
Target:  5'- gGUCgCGGCGGCGCUUcC-GCCCGCGGg -3'
miRNA:   3'- -CAGaGCCGCCGCGAGcGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 80747 0.78 0.093778
Target:  5'- ---gCGGCGGCGCcCGCcucGCCCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGaGCGa--CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 89072 0.78 0.096166
Target:  5'- gGUUUCGGCGGCGCUCuuUcGCCCGCc- -3'
miRNA:   3'- -CAGAGCCGCCGCGAGcgA-CGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 87500 0.78 0.101117
Target:  5'- -gCUCGGCGGCuGCUUGCacgUGCCCGCc- -3'
miRNA:   3'- caGAGCCGCCG-CGAGCG---ACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 75552 0.77 0.106307
Target:  5'- aUCUCGGCGGCcga-GCUGCCCGUGa -3'
miRNA:   3'- cAGAGCCGCCGcgagCGACGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 65738 0.77 0.108453
Target:  5'- ----gGGCGGCGCUCGagagcguggugGCCCGCGGg -3'
miRNA:   3'- cagagCCGCCGCGAGCga---------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 73239 0.77 0.113712
Target:  5'- uGUCUCGGCGGaccucgcguacuucCGCUCGCcgUGCaacccCCGCGGg -3'
miRNA:   3'- -CAGAGCCGCC--------------GCGAGCG--ACG-----GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 90954 0.77 0.117446
Target:  5'- -gCUCGGCGGCGCUC----CCCGCGGu -3'
miRNA:   3'- caGAGCCGCCGCGAGcgacGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 106398 0.76 0.120397
Target:  5'- cGUCggcacgcacgCGcGCGGCGa-CGCUGCCCGCGGc -3'
miRNA:   3'- -CAGa---------GC-CGCCGCgaGCGACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 69376 0.76 0.120397
Target:  5'- gGUCUuugCGGCGGUGg-CGCUGCCgGCGGc -3'
miRNA:   3'- -CAGA---GCCGCCGCgaGCGACGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 77072 0.76 0.123416
Target:  5'- cUC-CGGCGGCGCUCGCcGCCgaagCGCGa -3'
miRNA:   3'- cAGaGCCGCCGCGAGCGaCGG----GCGCc -5'
6498 5' -64.1 NC_001847.1 + 20050 0.76 0.129666
Target:  5'- -cCUgGGCGcgggcaaaaauGCGCUCGCUGCCUGCGc -3'
miRNA:   3'- caGAgCCGC-----------CGCGAGCGACGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 37007 0.76 0.132899
Target:  5'- ---gCGGCGGCGCgcucgaGCUgacGCCCGCGGa -3'
miRNA:   3'- cagaGCCGCCGCGag----CGA---CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 82510 0.76 0.135873
Target:  5'- cGUCUgGcGCGGCGCUCGCgcacgcgccgaagUcaaaggcgccGCCCGCGGg -3'
miRNA:   3'- -CAGAgC-CGCCGCGAGCG-------------A----------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 89937 0.76 0.135873
Target:  5'- cUCgCGGCGGCGCUCGCgcugcgagacgacUGCCagcgCGCGGc -3'
miRNA:   3'- cAGaGCCGCCGCGAGCG-------------ACGG----GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 106659 0.75 0.14305
Target:  5'- ---gCGGCGGCGC-CGCggcGUCCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGaGCGa--CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 54589 0.75 0.150206
Target:  5'- -gCUgGGCGGCGCUgGCggcgcgcGCCCGCGc -3'
miRNA:   3'- caGAgCCGCCGCGAgCGa------CGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 101633 0.75 0.161552
Target:  5'- cUCcgCGGCGGCGCccgcCGCcGCCCGCGc -3'
miRNA:   3'- cAGa-GCCGCCGCGa---GCGaCGGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.