miRNA display CGI


Results 1 - 20 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 110 0.66 0.53926
Target:  5'- gGUC-CGGCGccccGCGCcccgGCcccGCCCGCGGg -3'
miRNA:   3'- -CAGaGCCGC----CGCGag--CGa--CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 493 0.67 0.457068
Target:  5'- ---gCGGCGGgGCggccgCGCgccaaccccccUGUCCGCGGa -3'
miRNA:   3'- cagaGCCGCCgCGa----GCG-----------ACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 998 0.7 0.33613
Target:  5'- ---gCGGCGGCgGCacgCGCUccaccaggccgccGCCCGCGGc -3'
miRNA:   3'- cagaGCCGCCG-CGa--GCGA-------------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 1064 0.67 0.457068
Target:  5'- ---gCGGCGGCGCcgggcuguUCGCUGCuccCCGCc- -3'
miRNA:   3'- cagaGCCGCCGCG--------AGCGACG---GGCGcc -5'
6498 5' -64.1 NC_001847.1 + 1284 0.67 0.465884
Target:  5'- --gUUGGCGGCGCggugGCUGgCCGCc- -3'
miRNA:   3'- cagAGCCGCCGCGag--CGACgGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 1943 0.66 0.511204
Target:  5'- -aCUCGGgccgcCGGCGCUCGUccucGCCgGgCGGc -3'
miRNA:   3'- caGAGCC-----GCCGCGAGCGa---CGGgC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 2076 0.69 0.351482
Target:  5'- gGUggCGGCGaGCGCccCGCgggGCCCGCGcGg -3'
miRNA:   3'- -CAgaGCCGC-CGCGa-GCGa--CGGGCGC-C- -5'
6498 5' -64.1 NC_001847.1 + 2405 0.71 0.270426
Target:  5'- -gCUCGGCcGUgGCUCGCUGCgCCGCu- -3'
miRNA:   3'- caGAGCCGcCG-CGAGCGACG-GGCGcc -5'
6498 5' -64.1 NC_001847.1 + 2539 0.66 0.511204
Target:  5'- ---cCGGCGGCGCUCccGCcGCCgGgcCGGg -3'
miRNA:   3'- cagaGCCGCCGCGAG--CGaCGGgC--GCC- -5'
6498 5' -64.1 NC_001847.1 + 2566 0.68 0.39
Target:  5'- uGUCuUCGGCgcgGGCGCcugCGCgGCCgcCGCGGc -3'
miRNA:   3'- -CAG-AGCCG---CCGCGa--GCGaCGG--GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 2630 0.67 0.457068
Target:  5'- -cUUCGGCGGgacCGCcgUCGCcGCuuGCGGc -3'
miRNA:   3'- caGAGCCGCC---GCG--AGCGaCGggCGCC- -5'
6498 5' -64.1 NC_001847.1 + 2760 0.66 0.53926
Target:  5'- ---gCGGCGGCGCcggCGCcggcgcccccGCCgGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGa--GCGa---------CGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 3216 0.68 0.406161
Target:  5'- -gCUCGcGCaGcCGCUCGCgcgccGCCCGCGc -3'
miRNA:   3'- caGAGC-CGcC-GCGAGCGa----CGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 3303 0.69 0.366561
Target:  5'- -gCUCGGCGaGCGCggCGCggGCgCCGCu- -3'
miRNA:   3'- caGAGCCGC-CGCGa-GCGa-CG-GGCGcc -5'
6498 5' -64.1 NC_001847.1 + 3871 0.7 0.329701
Target:  5'- cUCcagCGGCGGCgGCccgUCGCgcgGCgCCGCGGc -3'
miRNA:   3'- cAGa--GCCGCCG-CG---AGCGa--CG-GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 3964 0.7 0.293695
Target:  5'- cGUCUcCGGCGGCGagggcgccgggggcCgggCGCgcgGcCCCGCGGg -3'
miRNA:   3'- -CAGA-GCCGCCGC--------------Ga--GCGa--C-GGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 4439 0.66 0.529846
Target:  5'- -cCUCGGCcucGGCGCacucCGCgacGUCCGCGu -3'
miRNA:   3'- caGAGCCG---CCGCGa---GCGa--CGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 4553 0.66 0.53926
Target:  5'- cGUCUcCGGCGcCGUcguccUCGCUGCucuCCGCGu -3'
miRNA:   3'- -CAGA-GCCGCcGCG-----AGCGACG---GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 4613 0.69 0.34411
Target:  5'- -gCUCGGCcagcucGGCGCggGCgGCCCGcCGGc -3'
miRNA:   3'- caGAGCCG------CCGCGagCGaCGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 6079 0.69 0.36351
Target:  5'- cGUCaaCGGC-GCGCUCGCggaggcgcgagacGCCCGCGa -3'
miRNA:   3'- -CAGa-GCCGcCGCGAGCGa------------CGGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.