miRNA display CGI


Results 1 - 20 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 134874 0.68 0.406161
Target:  5'- -gCUCGGCGGCccccggGCUCGg-GCCCcUGGg -3'
miRNA:   3'- caGAGCCGCCG------CGAGCgaCGGGcGCC- -5'
6498 5' -64.1 NC_001847.1 + 134751 0.69 0.358966
Target:  5'- gGUCUCGGuCGgaGCGCgguccggCGCgcgGCgCGCGGg -3'
miRNA:   3'- -CAGAGCC-GC--CGCGa------GCGa--CGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 134386 0.72 0.22469
Target:  5'- ---cCGGCGGCGggccggcCUCGCccuagggggGCCCGCGGg -3'
miRNA:   3'- cagaGCCGCCGC-------GAGCGa--------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 134043 0.69 0.34411
Target:  5'- ---gCGGCGGCGC-CGCccgcGgCCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGaGCGa---CgGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 133892 0.66 0.505665
Target:  5'- -gCUCGGCGcGcCGCU-GCggccgguguaccugGCCUGCGGg -3'
miRNA:   3'- caGAGCCGC-C-GCGAgCGa-------------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 133763 0.66 0.501986
Target:  5'- ---cCGGCaGCGCgUGCUGCCgGCGc -3'
miRNA:   3'- cagaGCCGcCGCGaGCGACGGgCGCc -5'
6498 5' -64.1 NC_001847.1 + 133147 0.72 0.235878
Target:  5'- ---gUGGUGGUGCUcuacgaccCGCUGCCCGgGGa -3'
miRNA:   3'- cagaGCCGCCGCGA--------GCGACGGGCgCC- -5'
6498 5' -64.1 NC_001847.1 + 133072 0.66 0.529846
Target:  5'- ---gCGG-GGCGCUCGCcGCCaccgcuGCGGc -3'
miRNA:   3'- cagaGCCgCCGCGAGCGaCGGg-----CGCC- -5'
6498 5' -64.1 NC_001847.1 + 132810 0.69 0.351482
Target:  5'- ---gCGGCGGgagcCGC-CGCUGCCCGCc- -3'
miRNA:   3'- cagaGCCGCC----GCGaGCGACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 132662 0.69 0.358966
Target:  5'- cGUCUucacacggcggCGGgGGCGC-CGCcGCCCGCu- -3'
miRNA:   3'- -CAGA-----------GCCgCCGCGaGCGaCGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 132549 0.7 0.295649
Target:  5'- ---gCGGCGG-GCUCGCgUGCggCCGCGGc -3'
miRNA:   3'- cagaGCCGCCgCGAGCG-ACG--GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 132350 0.69 0.34411
Target:  5'- ---gCGGCcGCGCUCGCgGCCCuggaggccgccgGCGGg -3'
miRNA:   3'- cagaGCCGcCGCGAGCGaCGGG------------CGCC- -5'
6498 5' -64.1 NC_001847.1 + 132294 0.66 0.548731
Target:  5'- -cCUgGGCgcuGGCGCgcgCGCUguucaGCCCGcCGGc -3'
miRNA:   3'- caGAgCCG---CCGCGa--GCGA-----CGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 132261 0.69 0.34411
Target:  5'- -aCUCGacgcGCGGCGCg-GCgGCCCGCGc -3'
miRNA:   3'- caGAGC----CGCCGCGagCGaCGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 132179 0.69 0.374265
Target:  5'- ---cCGGCGGCGCUgCGC-GCCgagGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGA-GCGaCGGg--CGCC- -5'
6498 5' -64.1 NC_001847.1 + 132139 0.74 0.186578
Target:  5'- -aUUgGGCGGCGCU-GCUGCCgCGCaGGg -3'
miRNA:   3'- caGAgCCGCCGCGAgCGACGG-GCG-CC- -5'
6498 5' -64.1 NC_001847.1 + 131673 0.68 0.398028
Target:  5'- cUCUCGGCGcgccggcgcGCGCUUGCUGUcgacuuCCGCc- -3'
miRNA:   3'- cAGAGCCGC---------CGCGAGCGACG------GGCGcc -5'
6498 5' -64.1 NC_001847.1 + 131439 0.68 0.414398
Target:  5'- ---gCGGCGGC---CGCgggGCCCGCGGc -3'
miRNA:   3'- cagaGCCGCCGcgaGCGa--CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 131366 0.72 0.252666
Target:  5'- -cUUCGGCGGCGCggGCgacaCCCGCGa -3'
miRNA:   3'- caGAGCCGCCGCGagCGac--GGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 131306 0.71 0.289176
Target:  5'- cGUCUgGgGCGGCGCgaacaaCGCcacGCUCGCGGc -3'
miRNA:   3'- -CAGAgC-CGCCGCGa-----GCGa--CGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.