miRNA display CGI


Results 41 - 60 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 105679 0.66 0.529846
Target:  5'- -cCUCGGCcgcgGGCGg-CGCUucGgCCGCGGg -3'
miRNA:   3'- caGAGCCG----CCGCgaGCGA--CgGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 4439 0.66 0.529846
Target:  5'- -cCUCGGCcucGGCGCacucCGCgacGUCCGCGu -3'
miRNA:   3'- caGAGCCG---CCGCGa---GCGa--CGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 104381 0.66 0.529846
Target:  5'- ---aCGcGCGGCGCUgcaGCgGgCCGCGGu -3'
miRNA:   3'- cagaGC-CGCCGCGAg--CGaCgGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 74287 0.66 0.529846
Target:  5'- -cCUCGcGCuggacgcccuGGCGCcgCGCaGCgCCGCGGg -3'
miRNA:   3'- caGAGC-CG----------CCGCGa-GCGaCG-GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 66664 0.66 0.529846
Target:  5'- ---cUGGC-GCGCUUGC-GCCCGCGcGg -3'
miRNA:   3'- cagaGCCGcCGCGAGCGaCGGGCGC-C- -5'
6498 5' -64.1 NC_001847.1 + 34519 0.66 0.529846
Target:  5'- ---gCGGaCGGCGCcggcgaugCGCcGCCCGcCGGg -3'
miRNA:   3'- cagaGCC-GCCGCGa-------GCGaCGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 11721 0.66 0.529846
Target:  5'- -aUUCGGCGGCaCguaugacgCGCUGCUgGgGGa -3'
miRNA:   3'- caGAGCCGCCGcGa-------GCGACGGgCgCC- -5'
6498 5' -64.1 NC_001847.1 + 107252 0.66 0.529846
Target:  5'- -cCUCGGCcucGGCGCacucCGCgacGUCCGCGu -3'
miRNA:   3'- caGAGCCG---CCGCGa---GCGa--CGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 133072 0.66 0.529846
Target:  5'- ---gCGG-GGCGCUCGCcGCCaccgcuGCGGc -3'
miRNA:   3'- cagaGCCgCCGCGAGCGaCGGg-----CGCC- -5'
6498 5' -64.1 NC_001847.1 + 85733 0.66 0.529846
Target:  5'- ---aCGGCGGCagGCUgCGCggaGCCCGCc- -3'
miRNA:   3'- cagaGCCGCCG--CGA-GCGa--CGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 86991 0.66 0.529846
Target:  5'- ----gGGcCGGCGCgCGCcgGCCCgGCGGu -3'
miRNA:   3'- cagagCC-GCCGCGaGCGa-CGGG-CGCC- -5'
6498 5' -64.1 NC_001847.1 + 32759 0.66 0.529846
Target:  5'- uUCgcgGGCGGCGCuUCGCgacgGCCgGCc- -3'
miRNA:   3'- cAGag-CCGCCGCG-AGCGa---CGGgCGcc -5'
6498 5' -64.1 NC_001847.1 + 35893 0.66 0.529846
Target:  5'- aGUCggcggCGGCGGCGUggGacgGCgCGUGGg -3'
miRNA:   3'- -CAGa----GCCGCCGCGagCga-CGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 96997 0.66 0.528908
Target:  5'- cUCggGGCGGCGCgccgcgcgaagacUCGgUGCCCgGCGc -3'
miRNA:   3'- cAGagCCGCCGCG-------------AGCgACGGG-CGCc -5'
6498 5' -64.1 NC_001847.1 + 123744 0.66 0.520493
Target:  5'- --aUCGGCGGCGC--GCUGCaugauagcaGCGGc -3'
miRNA:   3'- cagAGCCGCCGCGagCGACGgg-------CGCC- -5'
6498 5' -64.1 NC_001847.1 + 53711 0.66 0.520493
Target:  5'- aGUCUgugggccggCGGCuGGCGCUgUGC-GCCUGCGa -3'
miRNA:   3'- -CAGA---------GCCG-CCGCGA-GCGaCGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 119260 0.66 0.520493
Target:  5'- ---aUGGCGGCGCcCGCgcgGCUCGUcgaGGg -3'
miRNA:   3'- cagaGCCGCCGCGaGCGa--CGGGCG---CC- -5'
6498 5' -64.1 NC_001847.1 + 47553 0.66 0.520493
Target:  5'- ---aCGGCgGGCGCggGgaGCCCgGCGGc -3'
miRNA:   3'- cagaGCCG-CCGCGagCgaCGGG-CGCC- -5'
6498 5' -64.1 NC_001847.1 + 37221 0.66 0.520493
Target:  5'- -gCUUGGCGGCGg-CGCggacGaCCCgGCGGa -3'
miRNA:   3'- caGAGCCGCCGCgaGCGa---C-GGG-CGCC- -5'
6498 5' -64.1 NC_001847.1 + 48179 0.66 0.520493
Target:  5'- ---cCGGCGGCGUccUGCUGUgCCGCGc -3'
miRNA:   3'- cagaGCCGCCGCGa-GCGACG-GGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.