Results 21 - 40 of 420 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 102372 | 0.66 | 0.53926 |
Target: 5'- cGUCcagCGGcCGGCcgucGCgaagCGCcGCCCGCGa -3' miRNA: 3'- -CAGa--GCC-GCCG----CGa---GCGaCGGGCGCc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 65914 | 0.66 | 0.53926 |
Target: 5'- uUUUCGccgucGCGGCGUcggCGUUcCCCGCGGa -3' miRNA: 3'- cAGAGC-----CGCCGCGa--GCGAcGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 110 | 0.66 | 0.53926 |
Target: 5'- gGUC-CGGCGccccGCGCcccgGCcccGCCCGCGGg -3' miRNA: 3'- -CAGaGCCGC----CGCGag--CGa--CGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 2760 | 0.66 | 0.53926 |
Target: 5'- ---gCGGCGGCGCcggCGCcggcgcccccGCCgGCGGc -3' miRNA: 3'- cagaGCCGCCGCGa--GCGa---------CGGgCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 89134 | 0.66 | 0.53926 |
Target: 5'- --gUCGuGCGcGCGCUCG-UGCCCGUc- -3' miRNA: 3'- cagAGC-CGC-CGCGAGCgACGGGCGcc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 59558 | 0.66 | 0.53926 |
Target: 5'- ----gGGCGGCGggggCGgUGCCgGCGGa -3' miRNA: 3'- cagagCCGCCGCga--GCgACGGgCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 127946 | 0.66 | 0.53926 |
Target: 5'- ---gCGGCGGcCGCg-GCUGCCUaaagccgaaGCGGa -3' miRNA: 3'- cagaGCCGCC-GCGagCGACGGG---------CGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 93515 | 0.66 | 0.53926 |
Target: 5'- ---cCGGCGcGcCGCUCGCgGCCaucacgGCGGa -3' miRNA: 3'- cagaGCCGC-C-GCGAGCGaCGGg-----CGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 105573 | 0.66 | 0.53926 |
Target: 5'- ---gCGGCGGCGCcggCGCcggcgcccccGCCgGCGGc -3' miRNA: 3'- cagaGCCGCCGCGa--GCGa---------CGGgCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 102923 | 0.66 | 0.53926 |
Target: 5'- gGUC-CGGCGccccGCGCcccgGCcccGCCCGCGGg -3' miRNA: 3'- -CAGaGCCGC----CGCGag--CGa--CGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 107366 | 0.66 | 0.53926 |
Target: 5'- cGUCUcCGGCGcCGUcguccUCGCUGCucuCCGCGu -3' miRNA: 3'- -CAGA-GCCGCcGCG-----AGCGACG---GGCGCc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 4553 | 0.66 | 0.53926 |
Target: 5'- cGUCUcCGGCGcCGUcguccUCGCUGCucuCCGCGu -3' miRNA: 3'- -CAGA-GCCGCcGCG-----AGCGACG---GGCGCc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 90020 | 0.66 | 0.53926 |
Target: 5'- -cCUCGGCGucugucGCGCUCuGUUGUCUGCc- -3' miRNA: 3'- caGAGCCGC------CGCGAG-CGACGGGCGcc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 85733 | 0.66 | 0.529846 |
Target: 5'- ---aCGGCGGCagGCUgCGCggaGCCCGCc- -3' miRNA: 3'- cagaGCCGCCG--CGA-GCGa--CGGGCGcc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 32759 | 0.66 | 0.529846 |
Target: 5'- uUCgcgGGCGGCGCuUCGCgacgGCCgGCc- -3' miRNA: 3'- cAGag-CCGCCGCG-AGCGa---CGGgCGcc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 11721 | 0.66 | 0.529846 |
Target: 5'- -aUUCGGCGGCaCguaugacgCGCUGCUgGgGGa -3' miRNA: 3'- caGAGCCGCCGcGa-------GCGACGGgCgCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 133072 | 0.66 | 0.529846 |
Target: 5'- ---gCGG-GGCGCUCGCcGCCaccgcuGCGGc -3' miRNA: 3'- cagaGCCgCCGCGAGCGaCGGg-----CGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 34519 | 0.66 | 0.529846 |
Target: 5'- ---gCGGaCGGCGCcggcgaugCGCcGCCCGcCGGg -3' miRNA: 3'- cagaGCC-GCCGCGa-------GCGaCGGGC-GCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 35893 | 0.66 | 0.529846 |
Target: 5'- aGUCggcggCGGCGGCGUggGacgGCgCGUGGg -3' miRNA: 3'- -CAGa----GCCGCCGCGagCga-CGgGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 107252 | 0.66 | 0.529846 |
Target: 5'- -cCUCGGCcucGGCGCacucCGCgacGUCCGCGu -3' miRNA: 3'- caGAGCCG---CCGCGa---GCGa--CGGGCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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