miRNA display CGI


Results 41 - 60 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 3' -60.2 NC_001847.1 + 15842 0.66 0.690792
Target:  5'- cGaCCGUg-CCGUcgAUGUacaGCGCGCGUCg -3'
miRNA:   3'- aC-GGCGagGGCG--UACAg--CGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 100298 0.66 0.690792
Target:  5'- cUGCCGUcgCCCGC-UG-CGCGCuCGcCu -3'
miRNA:   3'- -ACGGCGa-GGGCGuACaGCGCGuGCaG- -5'
6499 3' -60.2 NC_001847.1 + 4625 0.66 0.690792
Target:  5'- cGgCGCgggcggCCCGCcgGcgcUCGCGCGCcUCa -3'
miRNA:   3'- aCgGCGa-----GGGCGuaC---AGCGCGUGcAG- -5'
6499 3' -60.2 NC_001847.1 + 91857 0.66 0.690792
Target:  5'- -uCCGCagCCCGCGca-CGCGCgGCGUCg -3'
miRNA:   3'- acGGCGa-GGGCGUacaGCGCG-UGCAG- -5'
6499 3' -60.2 NC_001847.1 + 101525 0.66 0.690792
Target:  5'- aGCCGC-CgCGCccGUCGCcaGgGCGUCc -3'
miRNA:   3'- aCGGCGaGgGCGuaCAGCG--CgUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 107438 0.66 0.690792
Target:  5'- cGgCGCgggcggCCCGCcgGcgcUCGCGCGCcUCa -3'
miRNA:   3'- aCgGCGa-----GGGCGuaC---AGCGCGUGcAG- -5'
6499 3' -60.2 NC_001847.1 + 92182 0.66 0.690792
Target:  5'- gGCCgGCggCCCGCcccccccgCGCGCgGCGUCg -3'
miRNA:   3'- aCGG-CGa-GGGCGuaca----GCGCG-UGCAG- -5'
6499 3' -60.2 NC_001847.1 + 14844 0.66 0.690792
Target:  5'- aGCCgGC-CCCGCAg--CGCGaGCGUUg -3'
miRNA:   3'- aCGG-CGaGGGCGUacaGCGCgUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 105793 0.66 0.690792
Target:  5'- cGCCGCcggggCCgCGCGcUGgagcCGCGCGCGcUCc -3'
miRNA:   3'- aCGGCGa----GG-GCGU-ACa---GCGCGUGC-AG- -5'
6499 3' -60.2 NC_001847.1 + 107109 0.66 0.684822
Target:  5'- cGCCGCgUCUgGCGUGUgcaggcgcucguaagCGCGgCACGcCg -3'
miRNA:   3'- aCGGCG-AGGgCGUACA---------------GCGC-GUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 10207 0.66 0.68183
Target:  5'- cGCCGCcgggcccagggcgcgCCCGC-UGUCGCccccgGCGCGcCu -3'
miRNA:   3'- aCGGCGa--------------GGGCGuACAGCG-----CGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 113020 0.66 0.68183
Target:  5'- cGCCGCcgggcccagggcgcgCCCGC-UGUCGCccccgGCGCGcCu -3'
miRNA:   3'- aCGGCGa--------------GGGCGuACAGCG-----CGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 32147 0.66 0.68183
Target:  5'- cGCCGCgCCCGCGcacgccgcgacggCGUGCGCGg- -3'
miRNA:   3'- aCGGCGaGGGCGUaca----------GCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 83185 0.66 0.680832
Target:  5'- gUGCaucaCUgCCGCGggGUCGCGCGgcCGUCg -3'
miRNA:   3'- -ACGgc--GAgGGCGUa-CAGCGCGU--GCAG- -5'
6499 3' -60.2 NC_001847.1 + 62837 0.66 0.680832
Target:  5'- cUGCCGCagCCC-CccGagGCGCugGUCc -3'
miRNA:   3'- -ACGGCGa-GGGcGuaCagCGCGugCAG- -5'
6499 3' -60.2 NC_001847.1 + 119825 0.66 0.680832
Target:  5'- gGCCGCgaUCauGUAcggGUCGCGCACGcCc -3'
miRNA:   3'- aCGGCG--AGggCGUa--CAGCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 18814 0.66 0.680832
Target:  5'- cGCCaGCgCgCGCAUGggcacggcguccUCGCGCGCGcCg -3'
miRNA:   3'- aCGG-CGaGgGCGUAC------------AGCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 86731 0.66 0.680832
Target:  5'- --aCGCggCCCGCggagggcgauGUGUCGCGCugG-Cg -3'
miRNA:   3'- acgGCGa-GGGCG----------UACAGCGCGugCaG- -5'
6499 3' -60.2 NC_001847.1 + 5216 0.66 0.680832
Target:  5'- cGCCGCgacggaagCUgCGCAUGgcucCGUGCAgGUCu -3'
miRNA:   3'- aCGGCGa-------GG-GCGUACa---GCGCGUgCAG- -5'
6499 3' -60.2 NC_001847.1 + 32924 0.66 0.680832
Target:  5'- cGCCG-UCCCGCcgacgaccCGCGCGCGg- -3'
miRNA:   3'- aCGGCgAGGGCGuaca----GCGCGUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.