miRNA display CGI


Results 21 - 40 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 3' -60.2 NC_001847.1 + 2888 0.66 0.710563
Target:  5'- cGCCGCg-CCGCGcGUCGaguacCGCGCGa- -3'
miRNA:   3'- aCGGCGagGGCGUaCAGC-----GCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 41994 0.66 0.710563
Target:  5'- gGCCGCcuuUCCCGCggGggGCGC-CGg- -3'
miRNA:   3'- aCGGCG---AGGGCGuaCagCGCGuGCag -5'
6499 3' -60.2 NC_001847.1 + 93664 0.66 0.710563
Target:  5'- aGCUGCUUCgugCGCAUGcCGCGCGUG-Ca -3'
miRNA:   3'- aCGGCGAGG---GCGUACaGCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 1191 0.66 0.710563
Target:  5'- cGCCGCggCCgGCAgcucGUCGgGCGCc-- -3'
miRNA:   3'- aCGGCGa-GGgCGUa---CAGCgCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 45178 0.66 0.710563
Target:  5'- -aCCGCUUCCGCcg--CGCGCugG-Ca -3'
miRNA:   3'- acGGCGAGGGCGuacaGCGCGugCaG- -5'
6499 3' -60.2 NC_001847.1 + 39829 0.66 0.710563
Target:  5'- gGCCcgagcGCuUCCUGCGUGgCGCGCGCc-- -3'
miRNA:   3'- aCGG-----CG-AGGGCGUACaGCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 90356 0.66 0.700706
Target:  5'- aGCCGCcgucguccgUCCCGCcaa--GCGCGCGg- -3'
miRNA:   3'- aCGGCG---------AGGGCGuacagCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 17961 0.66 0.700706
Target:  5'- gUGCCGCgcuugcgCUCGCGU-UCGCuCGCGUUc -3'
miRNA:   3'- -ACGGCGa------GGGCGUAcAGCGcGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 10066 0.66 0.700706
Target:  5'- gGCCGCgcgggCCCaGCGccccGcCGCGCGCGg- -3'
miRNA:   3'- aCGGCGa----GGG-CGUa---CaGCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 29234 0.66 0.700706
Target:  5'- gGCCGCggCCUGCcgGcCGCggccuGCGCGcCg -3'
miRNA:   3'- aCGGCGa-GGGCGuaCaGCG-----CGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 132047 0.66 0.700706
Target:  5'- gGCCGCggCCUGCcgGcCGCggccuGCGCGcCg -3'
miRNA:   3'- aCGGCGa-GGGCGuaCaGCG-----CGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 29245 0.66 0.700706
Target:  5'- cUGCaugGC-CCCGCG-GcCGCGCACGg- -3'
miRNA:   3'- -ACGg--CGaGGGCGUaCaGCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 20500 0.66 0.700706
Target:  5'- aGaCgGCUCgCGCGUcGUCGCGgGCGg- -3'
miRNA:   3'- aC-GgCGAGgGCGUA-CAGCGCgUGCag -5'
6499 3' -60.2 NC_001847.1 + 60456 0.66 0.700706
Target:  5'- cGCUGC-CCCc---GUCGgGCGCGUCc -3'
miRNA:   3'- aCGGCGaGGGcguaCAGCgCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 115728 0.66 0.700706
Target:  5'- uUGgCGCUCCCGCu--UUGCcuGCuGCGUCg -3'
miRNA:   3'- -ACgGCGAGGGCGuacAGCG--CG-UGCAG- -5'
6499 3' -60.2 NC_001847.1 + 53803 0.66 0.700706
Target:  5'- cUGCCGCacgugCaagGCGUGUCGCGgGCG-Cg -3'
miRNA:   3'- -ACGGCGa----Ggg-CGUACAGCGCgUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 71171 0.66 0.700706
Target:  5'- cGCCGCgaaCaGgGUGUCGCGCAgCGcCg -3'
miRNA:   3'- aCGGCGag-GgCgUACAGCGCGU-GCaG- -5'
6499 3' -60.2 NC_001847.1 + 54963 0.66 0.700706
Target:  5'- gGCCGCUCUUugacgGCAg--CGCGCACa-- -3'
miRNA:   3'- aCGGCGAGGG-----CGUacaGCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 54303 0.66 0.700706
Target:  5'- cGCCGCcgCCCGgAUcugcccccccaaGUCGCgGCGCG-Cg -3'
miRNA:   3'- aCGGCGa-GGGCgUA------------CAGCG-CGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 105793 0.66 0.690792
Target:  5'- cGCCGCcggggCCgCGCGcUGgagcCGCGCGCGcUCc -3'
miRNA:   3'- aCGGCGa----GG-GCGU-ACa---GCGCGUGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.