Results 21 - 40 of 327 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6499 | 3' | -60.2 | NC_001847.1 | + | 73707 | 0.71 | 0.386562 |
Target: 5'- cGCCGCgCCCgGCGgcgcgGcCGCGgGCGUCg -3' miRNA: 3'- aCGGCGaGGG-CGUa----CaGCGCgUGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 46285 | 0.71 | 0.378411 |
Target: 5'- cGCCGCgUCUCgagcaGCAUGUCGCGCcCGa- -3' miRNA: 3'- aCGGCG-AGGG-----CGUACAGCGCGuGCag -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 67279 | 0.73 | 0.317461 |
Target: 5'- cGCCGUUCCCaGCGcGUCGCgaGCGCG-Cg -3' miRNA: 3'- aCGGCGAGGG-CGUaCAGCG--CGUGCaG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 15580 | 0.73 | 0.317461 |
Target: 5'- cGCCGCUgCCCGCAgagucugGcCGCGCGCc-- -3' miRNA: 3'- aCGGCGA-GGGCGUa------CaGCGCGUGcag -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 88893 | 0.73 | 0.292545 |
Target: 5'- gGCgGCUCCCGCcgGgggcggcucccuugCGCGCGCG-Cg -3' miRNA: 3'- aCGgCGAGGGCGuaCa-------------GCGCGUGCaG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 47371 | 0.74 | 0.276799 |
Target: 5'- gGCCGCcccgguuuagcuUCCCGUAgccGUCGagcCGCACGUCg -3' miRNA: 3'- aCGGCG------------AGGGCGUa--CAGC---GCGUGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 56824 | 0.74 | 0.264201 |
Target: 5'- aGCCGggCCCGCGg--CGCGCGCGcCg -3' miRNA: 3'- aCGGCgaGGGCGUacaGCGCGUGCaG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 131659 | 0.75 | 0.234742 |
Target: 5'- cGCCGCUgCCGCcgGUCGgGgACGcCa -3' miRNA: 3'- aCGGCGAgGGCGuaCAGCgCgUGCaG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 62160 | 0.75 | 0.234742 |
Target: 5'- gGCCaGCUCCCGCGcGggCGCGUccGCGUCc -3' miRNA: 3'- aCGG-CGAGGGCGUaCa-GCGCG--UGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 115090 | 0.78 | 0.160149 |
Target: 5'- cGCCGCUCCCGCAaacguacaguccagcUG-CGCGUaaaccaagcGCGUCg -3' miRNA: 3'- aCGGCGAGGGCGU---------------ACaGCGCG---------UGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 89121 | 0.73 | 0.32466 |
Target: 5'- cGCCGC-CCCGgugGUCGUGCGCG-Cg -3' miRNA: 3'- aCGGCGaGGGCguaCAGCGCGUGCaG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 4186 | 0.72 | 0.33942 |
Target: 5'- gGCCGCgcgCCCGUggGcCGCGCGCa-- -3' miRNA: 3'- aCGGCGa--GGGCGuaCaGCGCGUGcag -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 36344 | 0.72 | 0.362459 |
Target: 5'- gUGCCGCgCgCCGCGgcgCGCGCACG-Cg -3' miRNA: 3'- -ACGGCGaG-GGCGUacaGCGCGUGCaG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 70258 | 0.72 | 0.362459 |
Target: 5'- gUGCCGCUCUCGC-UGUaccgcgaggaCGCGCGCcuggcgggGUCg -3' miRNA: 3'- -ACGGCGAGGGCGuACA----------GCGCGUG--------CAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 49215 | 0.72 | 0.35466 |
Target: 5'- cGCCGgggCCCGCGggcuUCGUGUACGUCu -3' miRNA: 3'- aCGGCga-GGGCGUac--AGCGCGUGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 38582 | 0.72 | 0.35466 |
Target: 5'- aGCCGCggaggcUCCUgGCGUugagCGCGCGCGUCg -3' miRNA: 3'- aCGGCG------AGGG-CGUAca--GCGCGUGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 53433 | 0.72 | 0.35466 |
Target: 5'- gUGCCGCUUCCaCcgG-CGCGCGCGcCu -3' miRNA: 3'- -ACGGCGAGGGcGuaCaGCGCGUGCaG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 957 | 0.72 | 0.34698 |
Target: 5'- cGCCGCUCCaCGC-UG-CGCcGgGCGUCu -3' miRNA: 3'- aCGGCGAGG-GCGuACaGCG-CgUGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 103835 | 0.72 | 0.346218 |
Target: 5'- gGCCGCcgCCCGCGg--CGCGCcgcagcagcacgaGCGUCu -3' miRNA: 3'- aCGGCGa-GGGCGUacaGCGCG-------------UGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 132948 | 0.72 | 0.33942 |
Target: 5'- cUGCCGC-CCCGag-GUCGCgGCGCGg- -3' miRNA: 3'- -ACGGCGaGGGCguaCAGCG-CGUGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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