miRNA display CGI


Results 21 - 40 of 327 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 3' -60.2 NC_001847.1 + 98999 0.73 0.303426
Target:  5'- aGCCGCUgcaggCCCGCGUccgcggCGCGCGCGg- -3'
miRNA:   3'- aCGGCGA-----GGGCGUAca----GCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 67279 0.73 0.317461
Target:  5'- cGCCGUUCCCaGCGcGUCGCgaGCGCG-Cg -3'
miRNA:   3'- aCGGCGAGGG-CGUaCAGCG--CGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 15580 0.73 0.317461
Target:  5'- cGCCGCUgCCCGCAgagucugGcCGCGCGCc-- -3'
miRNA:   3'- aCGGCGA-GGGCGUa------CaGCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 74413 0.73 0.317461
Target:  5'- cGCCGCgCCCGCGcccGUCGUGgAgGUCg -3'
miRNA:   3'- aCGGCGaGGGCGUa--CAGCGCgUgCAG- -5'
6499 3' -60.2 NC_001847.1 + 89121 0.73 0.32466
Target:  5'- cGCCGC-CCCGgugGUCGUGCGCG-Cg -3'
miRNA:   3'- aCGGCGaGGGCguaCAGCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 53668 0.73 0.32466
Target:  5'- gGCCGCUCaacugccgccagCCGCAagaUGUgCGCGCGCGa- -3'
miRNA:   3'- aCGGCGAG------------GGCGU---ACA-GCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 132948 0.72 0.33942
Target:  5'- cUGCCGC-CCCGag-GUCGCgGCGCGg- -3'
miRNA:   3'- -ACGGCGaGGGCguaCAGCG-CGUGCag -5'
6499 3' -60.2 NC_001847.1 + 30135 0.72 0.33942
Target:  5'- cUGCCGC-CCCGag-GUCGCgGCGCGg- -3'
miRNA:   3'- -ACGGCGaGGGCguaCAGCG-CGUGCag -5'
6499 3' -60.2 NC_001847.1 + 4186 0.72 0.33942
Target:  5'- gGCCGCgcgCCCGUggGcCGCGCGCa-- -3'
miRNA:   3'- aCGGCGa--GGGCGuaCaGCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 91173 0.72 0.346218
Target:  5'- cGCCuuauauagauccaGCUCguCCGC--GUCGCGCGCGUCg -3'
miRNA:   3'- aCGG-------------CGAG--GGCGuaCAGCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 1022 0.72 0.346218
Target:  5'- gGCCGCcgCCCGCGg--CGCGCcgcagcagcacgaGCGUCu -3'
miRNA:   3'- aCGGCGa-GGGCGUacaGCGCG-------------UGCAG- -5'
6499 3' -60.2 NC_001847.1 + 103835 0.72 0.346218
Target:  5'- gGCCGCcgCCCGCGg--CGCGCcgcagcagcacgaGCGUCu -3'
miRNA:   3'- aCGGCGa-GGGCGUacaGCGCG-------------UGCAG- -5'
6499 3' -60.2 NC_001847.1 + 53930 0.72 0.34698
Target:  5'- cUGCCGCcgagCCUGCAUcuaCGCGCGCGcCg -3'
miRNA:   3'- -ACGGCGa---GGGCGUAca-GCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 957 0.72 0.34698
Target:  5'- cGCCGCUCCaCGC-UG-CGCcGgGCGUCu -3'
miRNA:   3'- aCGGCGAGG-GCGuACaGCG-CgUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 130601 0.72 0.34698
Target:  5'- cGCCGCgccaCCCGCGggcgGcCGCcgcgagGCACGUCg -3'
miRNA:   3'- aCGGCGa---GGGCGUa---CaGCG------CGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 38582 0.72 0.35466
Target:  5'- aGCCGCggaggcUCCUgGCGUugagCGCGCGCGUCg -3'
miRNA:   3'- aCGGCG------AGGG-CGUAca--GCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 53433 0.72 0.35466
Target:  5'- gUGCCGCUUCCaCcgG-CGCGCGCGcCu -3'
miRNA:   3'- -ACGGCGAGGGcGuaCaGCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 49215 0.72 0.35466
Target:  5'- cGCCGgggCCCGCGggcuUCGUGUACGUCu -3'
miRNA:   3'- aCGGCga-GGGCGUac--AGCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 12924 0.72 0.362459
Target:  5'- cGCCGCgggggCgCGCGUGUCGuCGUGCGg- -3'
miRNA:   3'- aCGGCGa----GgGCGUACAGC-GCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 70258 0.72 0.362459
Target:  5'- gUGCCGCUCUCGC-UGUaccgcgaggaCGCGCGCcuggcgggGUCg -3'
miRNA:   3'- -ACGGCGAGGGCGuACA----------GCGCGUG--------CAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.