miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 3' -60.2 NC_001847.1 + 13966 1 0.004513
Target:  5'- gUGCCGC-CCCGCAUGUCGCGCACGUCc -3'
miRNA:   3'- -ACGGCGaGGGCGUACAGCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 74332 0.78 0.147017
Target:  5'- gUGCCGCUgCCGCAgg-CGCGCGCGc- -3'
miRNA:   3'- -ACGGCGAgGGCGUacaGCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 97794 0.78 0.158551
Target:  5'- cGCCaGCU-CCGCAcgGUCGCGCGCGUg -3'
miRNA:   3'- aCGG-CGAgGGCGUa-CAGCGCGUGCAg -5'
6499 3' -60.2 NC_001847.1 + 82845 0.78 0.158551
Target:  5'- cGCCGCccgcgCCCGCG-GUCGCGCACa-- -3'
miRNA:   3'- aCGGCGa----GGGCGUaCAGCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 115090 0.78 0.160149
Target:  5'- cGCCGCUCCCGCAaacguacaguccagcUG-CGCGUaaaccaagcGCGUCg -3'
miRNA:   3'- aCGGCGAGGGCGU---------------ACaGCGCG---------UGCAG- -5'
6499 3' -60.2 NC_001847.1 + 80510 0.77 0.184093
Target:  5'- aGCCGCUCggcauagCGC-UGUCgGCGCACGUCg -3'
miRNA:   3'- aCGGCGAGg------GCGuACAG-CGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 99903 0.77 0.184093
Target:  5'- cGCCGCgcgCCCGCcgGcCGCcugcaGCACGUCc -3'
miRNA:   3'- aCGGCGa--GGGCGuaCaGCG-----CGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 47863 0.76 0.193385
Target:  5'- gGCCGCgggCCGUcgG-CGCGCACGUCc -3'
miRNA:   3'- aCGGCGag-GGCGuaCaGCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 28846 0.75 0.234742
Target:  5'- cGCCGCUgCCGCcgGUCGgGgACGcCa -3'
miRNA:   3'- aCGGCGAgGGCGuaCAGCgCgUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 62160 0.75 0.234742
Target:  5'- gGCCaGCUCCCGCGcGggCGCGUccGCGUCc -3'
miRNA:   3'- aCGG-CGAGGGCGUaCa-GCGCG--UGCAG- -5'
6499 3' -60.2 NC_001847.1 + 131659 0.75 0.234742
Target:  5'- cGCCGCUgCCGCcgGUCGgGgACGcCa -3'
miRNA:   3'- aCGGCGAgGGCGuaCAGCgCgUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 49035 0.75 0.240404
Target:  5'- aGCCGCUCgUGCAg--CGUGCGCGUa -3'
miRNA:   3'- aCGGCGAGgGCGUacaGCGCGUGCAg -5'
6499 3' -60.2 NC_001847.1 + 116168 0.74 0.252071
Target:  5'- gGCCGCgggCgCCGCG-GcCGCGCugGUCg -3'
miRNA:   3'- aCGGCGa--G-GGCGUaCaGCGCGugCAG- -5'
6499 3' -60.2 NC_001847.1 + 56824 0.74 0.264201
Target:  5'- aGCCGggCCCGCGg--CGCGCGCGcCg -3'
miRNA:   3'- aCGGCgaGGGCGUacaGCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 120470 0.74 0.264201
Target:  5'- cGCCGCg-CCGCcgGcCGCGC-CGUCg -3'
miRNA:   3'- aCGGCGagGGCGuaCaGCGCGuGCAG- -5'
6499 3' -60.2 NC_001847.1 + 47371 0.74 0.276799
Target:  5'- gGCCGCcccgguuuagcuUCCCGUAgccGUCGagcCGCACGUCg -3'
miRNA:   3'- aCGGCG------------AGGGCGUa--CAGC---GCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 121201 0.74 0.283277
Target:  5'- gGCCGCagCCGCAgcUCGCGCAUGa- -3'
miRNA:   3'- aCGGCGagGGCGUacAGCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 64684 0.74 0.283277
Target:  5'- gGgCGC-CCgCGCGUGUCGCaGUGCGUCa -3'
miRNA:   3'- aCgGCGaGG-GCGUACAGCG-CGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 44876 0.73 0.289873
Target:  5'- cGCCGCUCaaaggCCGCGUGaaCGaGCGCGUCa -3'
miRNA:   3'- aCGGCGAG-----GGCGUACa-GCgCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 88893 0.73 0.292545
Target:  5'- gGCgGCUCCCGCcgGgggcggcucccuugCGCGCGCG-Cg -3'
miRNA:   3'- aCGgCGAGGGCGuaCa-------------GCGCGUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.