miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 3' -60.2 NC_001847.1 + 73707 0.71 0.386562
Target:  5'- cGCCGCgCCCgGCGgcgcgGcCGCGgGCGUCg -3'
miRNA:   3'- aCGGCGaGGG-CGUa----CaGCGCgUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 103835 0.72 0.346218
Target:  5'- gGCCGCcgCCCGCGg--CGCGCcgcagcagcacgaGCGUCu -3'
miRNA:   3'- aCGGCGa-GGGCGUacaGCGCG-------------UGCAG- -5'
6499 3' -60.2 NC_001847.1 + 957 0.72 0.34698
Target:  5'- cGCCGCUCCaCGC-UG-CGCcGgGCGUCu -3'
miRNA:   3'- aCGGCGAGG-GCGuACaGCG-CgUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 53433 0.72 0.35466
Target:  5'- gUGCCGCUUCCaCcgG-CGCGCGCGcCu -3'
miRNA:   3'- -ACGGCGAGGGcGuaCaGCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 38582 0.72 0.35466
Target:  5'- aGCCGCggaggcUCCUgGCGUugagCGCGCGCGUCg -3'
miRNA:   3'- aCGGCG------AGGG-CGUAca--GCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 49215 0.72 0.35466
Target:  5'- cGCCGgggCCCGCGggcuUCGUGUACGUCu -3'
miRNA:   3'- aCGGCga-GGGCGUac--AGCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 70258 0.72 0.362459
Target:  5'- gUGCCGCUCUCGC-UGUaccgcgaggaCGCGCGCcuggcgggGUCg -3'
miRNA:   3'- -ACGGCGAGGGCGuACA----------GCGCGUG--------CAG- -5'
6499 3' -60.2 NC_001847.1 + 36344 0.72 0.362459
Target:  5'- gUGCCGCgCgCCGCGgcgCGCGCACG-Cg -3'
miRNA:   3'- -ACGGCGaG-GGCGUacaGCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 46285 0.71 0.378411
Target:  5'- cGCCGCgUCUCgagcaGCAUGUCGCGCcCGa- -3'
miRNA:   3'- aCGGCG-AGGG-----CGUACAGCGCGuGCag -5'
6499 3' -60.2 NC_001847.1 + 132948 0.72 0.33942
Target:  5'- cUGCCGC-CCCGag-GUCGCgGCGCGg- -3'
miRNA:   3'- -ACGGCGaGGGCguaCAGCG-CGUGCag -5'
6499 3' -60.2 NC_001847.1 + 4186 0.72 0.33942
Target:  5'- gGCCGCgcgCCCGUggGcCGCGCGCa-- -3'
miRNA:   3'- aCGGCGa--GGGCGuaCaGCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 89121 0.73 0.32466
Target:  5'- cGCCGC-CCCGgugGUCGUGCGCG-Cg -3'
miRNA:   3'- aCGGCGaGGGCguaCAGCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 115090 0.78 0.160149
Target:  5'- cGCCGCUCCCGCAaacguacaguccagcUG-CGCGUaaaccaagcGCGUCg -3'
miRNA:   3'- aCGGCGAGGGCGU---------------ACaGCGCG---------UGCAG- -5'
6499 3' -60.2 NC_001847.1 + 62160 0.75 0.234742
Target:  5'- gGCCaGCUCCCGCGcGggCGCGUccGCGUCc -3'
miRNA:   3'- aCGG-CGAGGGCGUaCa-GCGCG--UGCAG- -5'
6499 3' -60.2 NC_001847.1 + 131659 0.75 0.234742
Target:  5'- cGCCGCUgCCGCcgGUCGgGgACGcCa -3'
miRNA:   3'- aCGGCGAgGGCGuaCAGCgCgUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 56824 0.74 0.264201
Target:  5'- aGCCGggCCCGCGg--CGCGCGCGcCg -3'
miRNA:   3'- aCGGCgaGGGCGUacaGCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 47371 0.74 0.276799
Target:  5'- gGCCGCcccgguuuagcuUCCCGUAgccGUCGagcCGCACGUCg -3'
miRNA:   3'- aCGGCG------------AGGGCGUa--CAGC---GCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 88893 0.73 0.292545
Target:  5'- gGCgGCUCCCGCcgGgggcggcucccuugCGCGCGCG-Cg -3'
miRNA:   3'- aCGgCGAGGGCGuaCa-------------GCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 15580 0.73 0.317461
Target:  5'- cGCCGCUgCCCGCAgagucugGcCGCGCGCc-- -3'
miRNA:   3'- aCGGCGA-GGGCGUa------CaGCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 67279 0.73 0.317461
Target:  5'- cGCCGUUCCCaGCGcGUCGCgaGCGCG-Cg -3'
miRNA:   3'- aCGGCGAGGG-CGUaCAGCG--CGUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.