miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 3' -60.2 NC_001847.1 + 109420 0.66 0.714488
Target:  5'- cGCCGCUUcucguccuucucgggCCGCA-GUgGCGgcuUACGUCg -3'
miRNA:   3'- aCGGCGAG---------------GGCGUaCAgCGC---GUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 90356 0.66 0.700706
Target:  5'- aGCCGCcgucguccgUCCCGCcaa--GCGCGCGg- -3'
miRNA:   3'- aCGGCG---------AGGGCGuacagCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 29234 0.66 0.700706
Target:  5'- gGCCGCggCCUGCcgGcCGCggccuGCGCGcCg -3'
miRNA:   3'- aCGGCGa-GGGCGuaCaGCG-----CGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 13966 1 0.004513
Target:  5'- gUGCCGC-CCCGCAUGUCGCGCACGUCc -3'
miRNA:   3'- -ACGGCGaGGGCGUACAGCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 76121 0.66 0.710563
Target:  5'- cGCCGCaCCCGCcac-CGuCGCACGcUCu -3'
miRNA:   3'- aCGGCGaGGGCGuacaGC-GCGUGC-AG- -5'
6499 3' -60.2 NC_001847.1 + 2981 0.66 0.710563
Target:  5'- cGCCGCcggggCCgGCGcUGgagcCGCGCGCGcUCc -3'
miRNA:   3'- aCGGCGa----GGgCGU-ACa---GCGCGUGC-AG- -5'
6499 3' -60.2 NC_001847.1 + 113013 0.66 0.710563
Target:  5'- uUG-CGCUCCaGCAcGcCGcCGCGCGUCu -3'
miRNA:   3'- -ACgGCGAGGgCGUaCaGC-GCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 86651 0.66 0.710563
Target:  5'- cGCCGC-CCCGgAg--CGCGcCGCGcUCg -3'
miRNA:   3'- aCGGCGaGGGCgUacaGCGC-GUGC-AG- -5'
6499 3' -60.2 NC_001847.1 + 2888 0.66 0.710563
Target:  5'- cGCCGCg-CCGCGcGUCGaguacCGCGCGa- -3'
miRNA:   3'- aCGGCGagGGCGUaCAGC-----GCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 17961 0.66 0.700706
Target:  5'- gUGCCGCgcuugcgCUCGCGU-UCGCuCGCGUUc -3'
miRNA:   3'- -ACGGCGa------GGGCGUAcAGCGcGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 39829 0.66 0.710563
Target:  5'- gGCCcgagcGCuUCCUGCGUGgCGCGCGCc-- -3'
miRNA:   3'- aCGG-----CG-AGGGCGUACaGCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 41994 0.66 0.710563
Target:  5'- gGCCGCcuuUCCCGCggGggGCGC-CGg- -3'
miRNA:   3'- aCGGCG---AGGGCGuaCagCGCGuGCag -5'
6499 3' -60.2 NC_001847.1 + 85105 0.66 0.710563
Target:  5'- gGCCGC-CaCCGCGccccgCGgGCugGUCa -3'
miRNA:   3'- aCGGCGaG-GGCGUaca--GCgCGugCAG- -5'
6499 3' -60.2 NC_001847.1 + 93664 0.66 0.710563
Target:  5'- aGCUGCUUCgugCGCAUGcCGCGCGUG-Ca -3'
miRNA:   3'- aCGGCGAGG---GCGUACaGCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 83761 0.66 0.710563
Target:  5'- cGCCGCgaCCGCGgccucCGCGaGCGUCa -3'
miRNA:   3'- aCGGCGagGGCGUaca--GCGCgUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 45178 0.66 0.710563
Target:  5'- -aCCGCUUCCGCcg--CGCGCugG-Ca -3'
miRNA:   3'- acGGCGAGGGCGuacaGCGCGugCaG- -5'
6499 3' -60.2 NC_001847.1 + 54303 0.66 0.700706
Target:  5'- cGCCGCcgCCCGgAUcugcccccccaaGUCGCgGCGCG-Cg -3'
miRNA:   3'- aCGGCGa-GGGCgUA------------CAGCG-CGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 71171 0.66 0.700706
Target:  5'- cGCCGCgaaCaGgGUGUCGCGCAgCGcCg -3'
miRNA:   3'- aCGGCGag-GgCgUACAGCGCGU-GCaG- -5'
6499 3' -60.2 NC_001847.1 + 76894 0.66 0.710563
Target:  5'- cGCCGaacccuaaUCCgGCcgagcucgCGCGCACGUCc -3'
miRNA:   3'- aCGGCg-------AGGgCGuaca----GCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 1729 0.66 0.710563
Target:  5'- cGCCGCg-CCGCGgccaGcCGCGCGCa-- -3'
miRNA:   3'- aCGGCGagGGCGUa---CaGCGCGUGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.