miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 3' -60.2 NC_001847.1 + 283 0.68 0.590405
Target:  5'- gGCCGCcgagCCCGCGcGg-GCGC-CGUCc -3'
miRNA:   3'- aCGGCGa---GGGCGUaCagCGCGuGCAG- -5'
6499 3' -60.2 NC_001847.1 + 608 0.68 0.560533
Target:  5'- gGCCGCU-CCGCAgcg-GCGCGCGg- -3'
miRNA:   3'- aCGGCGAgGGCGUacagCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 957 0.72 0.34698
Target:  5'- cGCCGCUCCaCGC-UG-CGCcGgGCGUCu -3'
miRNA:   3'- aCGGCGAGG-GCGuACaGCG-CgUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 1022 0.72 0.346218
Target:  5'- gGCCGCcgCCCGCGg--CGCGCcgcagcagcacgaGCGUCu -3'
miRNA:   3'- aCGGCGa-GGGCGUacaGCGCG-------------UGCAG- -5'
6499 3' -60.2 NC_001847.1 + 1191 0.66 0.710563
Target:  5'- cGCCGCggCCgGCAgcucGUCGgGCGCc-- -3'
miRNA:   3'- aCGGCGa-GGgCGUa---CAGCgCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 1344 0.68 0.58041
Target:  5'- cGCCGCgcCCUGCGcggccaUGUCcuuGCGCcCGUCg -3'
miRNA:   3'- aCGGCGa-GGGCGU------ACAG---CGCGuGCAG- -5'
6499 3' -60.2 NC_001847.1 + 1624 0.67 0.620541
Target:  5'- cGCCGCggcagCaCCGCGg--CGCGCAgGUa -3'
miRNA:   3'- aCGGCGa----G-GGCGUacaGCGCGUgCAg -5'
6499 3' -60.2 NC_001847.1 + 1729 0.66 0.710563
Target:  5'- cGCCGCg-CCGCGgccaGcCGCGCGCa-- -3'
miRNA:   3'- aCGGCGagGGCGUa---CaGCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 1977 0.68 0.59341
Target:  5'- cGCCGCcagcgccUCCCcgGCAgcggGUcguagagcaccaccaCGCGCACGUCc -3'
miRNA:   3'- aCGGCG-------AGGG--CGUa---CA---------------GCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 2343 0.68 0.550664
Target:  5'- gGCgGCUCCCGC----CGCGCcggcccggccGCGUCg -3'
miRNA:   3'- aCGgCGAGGGCGuacaGCGCG----------UGCAG- -5'
6499 3' -60.2 NC_001847.1 + 2857 0.66 0.670833
Target:  5'- aUGCCGCUgcgaCUCGCGggcGUCGUcgucgggccggGUGCGUCg -3'
miRNA:   3'- -ACGGCGA----GGGCGUa--CAGCG-----------CGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 2888 0.66 0.710563
Target:  5'- cGCCGCg-CCGCGcGUCGaguacCGCGCGa- -3'
miRNA:   3'- aCGGCGagGGCGUaCAGC-----GCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 2981 0.66 0.710563
Target:  5'- cGCCGCcggggCCgGCGcUGgagcCGCGCGCGcUCc -3'
miRNA:   3'- aCGGCGa----GGgCGU-ACa---GCGCGUGC-AG- -5'
6499 3' -60.2 NC_001847.1 + 3224 0.67 0.620541
Target:  5'- aGCCGCUCgCGCGccgccCGCGC-CGUg -3'
miRNA:   3'- aCGGCGAGgGCGUaca--GCGCGuGCAg -5'
6499 3' -60.2 NC_001847.1 + 3706 0.67 0.620541
Target:  5'- gGCCGCgggcCCCGCGgccgccgcGUaGCGCGCGg- -3'
miRNA:   3'- aCGGCGa---GGGCGUa-------CAgCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 3881 0.67 0.630612
Target:  5'- cGCaGCUCCCaGCGgagcgagccGUUGCGCGCGg- -3'
miRNA:   3'- aCGgCGAGGG-CGUa--------CAGCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 4186 0.72 0.33942
Target:  5'- gGCCGCgcgCCCGUggGcCGCGCGCa-- -3'
miRNA:   3'- aCGGCGa--GGGCGuaCaGCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 4542 0.68 0.58041
Target:  5'- gGCgGCcgCCCGCggGUgGCGCgGCGUg -3'
miRNA:   3'- aCGgCGa-GGGCGuaCAgCGCG-UGCAg -5'
6499 3' -60.2 NC_001847.1 + 4625 0.66 0.690792
Target:  5'- cGgCGCgggcggCCCGCcgGcgcUCGCGCGCcUCa -3'
miRNA:   3'- aCgGCGa-----GGGCGuaC---AGCGCGUGcAG- -5'
6499 3' -60.2 NC_001847.1 + 4930 0.68 0.590405
Target:  5'- cGCCGCgcuUCCCGCGcccucCGCGCcgccCGUCu -3'
miRNA:   3'- aCGGCG---AGGGCGUaca--GCGCGu---GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.