miRNA display CGI


Results 21 - 40 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 3' -60.2 NC_001847.1 + 4970 0.68 0.550664
Target:  5'- gGCCGggcgCCCGCGggGUCGUG-ACGUCc -3'
miRNA:   3'- aCGGCga--GGGCGUa-CAGCGCgUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 5216 0.66 0.680832
Target:  5'- cGCCGCgacggaagCUgCGCAUGgcucCGUGCAgGUCu -3'
miRNA:   3'- aCGGCGa-------GG-GCGUACa---GCGCGUgCAG- -5'
6499 3' -60.2 NC_001847.1 + 5218 0.7 0.446739
Target:  5'- cGCCGCggcggCCgGCGgggCGCGCGCGg- -3'
miRNA:   3'- aCGGCGa----GGgCGUacaGCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 5433 0.69 0.534988
Target:  5'- cGCuCGCUCCCccuGCGUGUUGCccgacggcgguggcgGCcGCGUCu -3'
miRNA:   3'- aCG-GCGAGGG---CGUACAGCG---------------CG-UGCAG- -5'
6499 3' -60.2 NC_001847.1 + 5707 0.7 0.445843
Target:  5'- aGCCGCUuggacacCCCGCAgcagGCGgGCGUCg -3'
miRNA:   3'- aCGGCGA-------GGGCGUacagCGCgUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 5888 0.68 0.58041
Target:  5'- -cCCGCcCCUGCc--UCGCGCGCGUUg -3'
miRNA:   3'- acGGCGaGGGCGuacAGCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 5940 0.66 0.710563
Target:  5'- cGCCGCgagcaagCgCGCGUacGUaCGCGCGCG-Cg -3'
miRNA:   3'- aCGGCGa------GgGCGUA--CA-GCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 6682 0.7 0.46487
Target:  5'- gGCCGCggcggCCgGCcgGgCGCGCGCG-Ca -3'
miRNA:   3'- aCGGCGa----GGgCGuaCaGCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 7131 0.7 0.474079
Target:  5'- uUGCCGgucuugccccCUCCCcuucggGCGUGUCGCGCuCGcUCg -3'
miRNA:   3'- -ACGGC----------GAGGG------CGUACAGCGCGuGC-AG- -5'
6499 3' -60.2 NC_001847.1 + 9688 0.68 0.577418
Target:  5'- cUGCCGCcgaCCCGCccGUCcuccggccagccacGCGCGgGUCc -3'
miRNA:   3'- -ACGGCGa--GGGCGuaCAG--------------CGCGUgCAG- -5'
6499 3' -60.2 NC_001847.1 + 10066 0.66 0.700706
Target:  5'- gGCCGCgcgggCCCaGCGccccGcCGCGCGCGg- -3'
miRNA:   3'- aCGGCGa----GGG-CGUa---CaGCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 10207 0.66 0.68183
Target:  5'- cGCCGCcgggcccagggcgcgCCCGC-UGUCGCccccgGCGCGcCu -3'
miRNA:   3'- aCGGCGa--------------GGGCGuACAGCG-----CGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 10610 0.68 0.550664
Target:  5'- cGCCGg-CCCGCGcccUGcUgGCGCugGUCc -3'
miRNA:   3'- aCGGCgaGGGCGU---AC-AgCGCGugCAG- -5'
6499 3' -60.2 NC_001847.1 + 11347 0.67 0.620541
Target:  5'- cUGCCGCUgCCGCc-GcCGCGCAgGcCc -3'
miRNA:   3'- -ACGGCGAgGGCGuaCaGCGCGUgCaG- -5'
6499 3' -60.2 NC_001847.1 + 11572 0.66 0.65779
Target:  5'- gUGCgGCUgCCGCGgugccgGUUGCuucugcgcuggccgGCGCGUCc -3'
miRNA:   3'- -ACGgCGAgGGCGUa-----CAGCG--------------CGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 12476 0.66 0.670833
Target:  5'- cGCgGCuUCCCGCGUGgcggCGgGgGCGg- -3'
miRNA:   3'- aCGgCG-AGGGCGUACa---GCgCgUGCag -5'
6499 3' -60.2 NC_001847.1 + 12924 0.72 0.362459
Target:  5'- cGCCGCgggggCgCGCGUGUCGuCGUGCGg- -3'
miRNA:   3'- aCGGCGa----GgGCGUACAGC-GCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 13362 0.67 0.630612
Target:  5'- gGaCGCUCcagCCGCGaacggCGCGCACGUCc -3'
miRNA:   3'- aCgGCGAG---GGCGUaca--GCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 13966 1 0.004513
Target:  5'- gUGCCGC-CCCGCAUGUCGCGCACGUCc -3'
miRNA:   3'- -ACGGCGaGGGCGUACAGCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 14652 0.68 0.590405
Target:  5'- cGCCGCUCgCUGCGagcGggGCGCGUGUCg -3'
miRNA:   3'- aCGGCGAG-GGCGUa--CagCGCGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.