miRNA display CGI


Results 21 - 40 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 3' -60.2 NC_001847.1 + 32147 0.66 0.68183
Target:  5'- cGCCGCgCCCGCGcacgccgcgacggCGUGCGCGg- -3'
miRNA:   3'- aCGGCGaGGGCGUaca----------GCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 32999 0.66 0.660803
Target:  5'- gGCCGCg-CCGCcgugGUCGCGCGgaGUg -3'
miRNA:   3'- aCGGCGagGGCGua--CAGCGCGUg-CAg -5'
6499 3' -60.2 NC_001847.1 + 53803 0.66 0.700706
Target:  5'- cUGCCGCacgugCaagGCGUGUCGCGgGCG-Cg -3'
miRNA:   3'- -ACGGCGa----Ggg-CGUACAGCGCgUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 2857 0.66 0.670833
Target:  5'- aUGCCGCUgcgaCUCGCGggcGUCGUcgucgggccggGUGCGUCg -3'
miRNA:   3'- -ACGGCGA----GGGCGUa--CAGCG-----------CGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 29245 0.66 0.700706
Target:  5'- cUGCaugGC-CCCGCG-GcCGCGCACGg- -3'
miRNA:   3'- -ACGg--CGaGGGCGUaCaGCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 20500 0.66 0.700706
Target:  5'- aGaCgGCUCgCGCGUcGUCGCGgGCGg- -3'
miRNA:   3'- aC-GgCGAGgGCGUA-CAGCGCgUGCag -5'
6499 3' -60.2 NC_001847.1 + 15929 0.66 0.660803
Target:  5'- cGCCGC-CCCGCGgugGcCGCG-GCGcCg -3'
miRNA:   3'- aCGGCGaGGGCGUa--CaGCGCgUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 62837 0.66 0.680832
Target:  5'- cUGCCGCagCCC-CccGagGCGCugGUCc -3'
miRNA:   3'- -ACGGCGa-GGGcGuaCagCGCGugCAG- -5'
6499 3' -60.2 NC_001847.1 + 132047 0.66 0.700706
Target:  5'- gGCCGCggCCUGCcgGcCGCggccuGCGCGcCg -3'
miRNA:   3'- aCGGCGa-GGGCGuaCaGCG-----CGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 54963 0.66 0.700706
Target:  5'- gGCCGCUCUUugacgGCAg--CGCGCACa-- -3'
miRNA:   3'- aCGGCGAGGG-----CGUacaGCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 129918 0.66 0.660803
Target:  5'- uUGCCGCgcgcgcCCCGCcgGcCGC-CGCGg- -3'
miRNA:   3'- -ACGGCGa-----GGGCGuaCaGCGcGUGCag -5'
6499 3' -60.2 NC_001847.1 + 17217 0.66 0.670833
Target:  5'- aGUCGUcgaCCGUAaagacGUCGCGCGCGUg -3'
miRNA:   3'- aCGGCGag-GGCGUa----CAGCGCGUGCAg -5'
6499 3' -60.2 NC_001847.1 + 15988 0.66 0.660803
Target:  5'- cGCCGC-CCCGCGgcgGcCGCG-GCGcCg -3'
miRNA:   3'- aCGGCGaGGGCGUa--CaGCGCgUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 33637 0.66 0.660803
Target:  5'- gGCgGCUgaCCGCGaGgcgcgCGCGCGCGUg -3'
miRNA:   3'- aCGgCGAg-GGCGUaCa----GCGCGUGCAg -5'
6499 3' -60.2 NC_001847.1 + 102335 0.66 0.670833
Target:  5'- gGCCGCgUCCgGCuccaaCGCGC-CGUCc -3'
miRNA:   3'- aCGGCG-AGGgCGuaca-GCGCGuGCAG- -5'
6499 3' -60.2 NC_001847.1 + 107438 0.66 0.690792
Target:  5'- cGgCGCgggcggCCCGCcgGcgcUCGCGCGCcUCa -3'
miRNA:   3'- aCgGCGa-----GGGCGuaC---AGCGCGUGcAG- -5'
6499 3' -60.2 NC_001847.1 + 82374 0.66 0.660803
Target:  5'- aGCgCGCg-CCGCGUGaccugCGgGCugGUCa -3'
miRNA:   3'- aCG-GCGagGGCGUACa----GCgCGugCAG- -5'
6499 3' -60.2 NC_001847.1 + 118422 0.66 0.660803
Target:  5'- cUGCUGUUUUCGCugGUGaUCGUGCuCGUCu -3'
miRNA:   3'- -ACGGCGAGGGCG--UAC-AGCGCGuGCAG- -5'
6499 3' -60.2 NC_001847.1 + 12476 0.66 0.670833
Target:  5'- cGCgGCuUCCCGCGUGgcggCGgGgGCGg- -3'
miRNA:   3'- aCGgCG-AGGGCGUACa---GCgCgUGCag -5'
6499 3' -60.2 NC_001847.1 + 115728 0.66 0.700706
Target:  5'- uUGgCGCUCCCGCu--UUGCcuGCuGCGUCg -3'
miRNA:   3'- -ACgGCGAGGGCGuacAGCG--CG-UGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.