miRNA display CGI


Results 1 - 20 of 327 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 3' -60.2 NC_001847.1 + 81175 0.65 0.716447
Target:  5'- cGCCGCUCggagggcUCGCGgcggcgccagccggCGCGCGCGUa -3'
miRNA:   3'- aCGGCGAG-------GGCGUaca-----------GCGCGUGCAg -5'
6499 3' -60.2 NC_001847.1 + 77063 0.66 0.670833
Target:  5'- cGCgGCaCCCGC-UGcggCGCGCGCG-Cg -3'
miRNA:   3'- aCGgCGaGGGCGuACa--GCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 102335 0.66 0.670833
Target:  5'- gGCCGCgUCCgGCuccaaCGCGC-CGUCc -3'
miRNA:   3'- aCGGCG-AGGgCGuaca-GCGCGuGCAG- -5'
6499 3' -60.2 NC_001847.1 + 32999 0.66 0.660803
Target:  5'- gGCCGCg-CCGCcgugGUCGCGCGgaGUg -3'
miRNA:   3'- aCGGCGagGGCGua--CAGCGCGUg-CAg -5'
6499 3' -60.2 NC_001847.1 + 70713 0.66 0.666825
Target:  5'- gGCCGCcgacuacgacgcgCCgGCA-GUgGCGCGCGUa -3'
miRNA:   3'- aCGGCGa------------GGgCGUaCAgCGCGUGCAg -5'
6499 3' -60.2 NC_001847.1 + 59572 0.66 0.669831
Target:  5'- gUGCCggcggaaGCUCUgGC-UGgCGUGCGCGUCc -3'
miRNA:   3'- -ACGG-------CGAGGgCGuACaGCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 82374 0.66 0.660803
Target:  5'- aGCgCGCg-CCGCGUGaccugCGgGCugGUCa -3'
miRNA:   3'- aCG-GCGagGGCGUACa----GCgCGugCAG- -5'
6499 3' -60.2 NC_001847.1 + 12476 0.66 0.670833
Target:  5'- cGCgGCuUCCCGCGUGgcggCGgGgGCGg- -3'
miRNA:   3'- aCGgCG-AGGGCGUACa---GCgCgUGCag -5'
6499 3' -60.2 NC_001847.1 + 129918 0.66 0.660803
Target:  5'- uUGCCGCgcgcgcCCCGCcgGcCGC-CGCGg- -3'
miRNA:   3'- -ACGGCGa-----GGGCGuaCaGCGcGUGCag -5'
6499 3' -60.2 NC_001847.1 + 15988 0.66 0.660803
Target:  5'- cGCCGC-CCCGCGgcgGcCGCG-GCGcCg -3'
miRNA:   3'- aCGGCGaGGGCGUa--CaGCGCgUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 17217 0.66 0.670833
Target:  5'- aGUCGUcgaCCGUAaagacGUCGCGCGCGUg -3'
miRNA:   3'- aCGGCGag-GGCGUa----CAGCGCGUGCAg -5'
6499 3' -60.2 NC_001847.1 + 123589 0.66 0.660803
Target:  5'- aGCCGCaCCCGC-UGg-GCGCAC-UCc -3'
miRNA:   3'- aCGGCGaGGGCGuACagCGCGUGcAG- -5'
6499 3' -60.2 NC_001847.1 + 18606 0.66 0.660803
Target:  5'- cGCCGU--CCGCGgcgucggCGCGCGCGUa -3'
miRNA:   3'- aCGGCGagGGCGUaca----GCGCGUGCAg -5'
6499 3' -60.2 NC_001847.1 + 96026 0.66 0.660803
Target:  5'- cGCCGUguaCGUAgcccUGUCGCGCAgcgUGUCg -3'
miRNA:   3'- aCGGCGaggGCGU----ACAGCGCGU---GCAG- -5'
6499 3' -60.2 NC_001847.1 + 33637 0.66 0.660803
Target:  5'- gGCgGCUgaCCGCGaGgcgcgCGCGCGCGUg -3'
miRNA:   3'- aCGgCGAg-GGCGUaCa----GCGCGUGCAg -5'
6499 3' -60.2 NC_001847.1 + 64456 0.66 0.660803
Target:  5'- cGCCGCcgCCCGCGg--CG-GCGCGg- -3'
miRNA:   3'- aCGGCGa-GGGCGUacaGCgCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 19344 0.66 0.660803
Target:  5'- cGCCGCggCCGgGUcUUGCGCGCGcCc -3'
miRNA:   3'- aCGGCGagGGCgUAcAGCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 67533 0.66 0.670833
Target:  5'- cGCCGCcuuuUUCCGCAgg-CGCGgGCGg- -3'
miRNA:   3'- aCGGCG----AGGGCGUacaGCGCgUGCag -5'
6499 3' -60.2 NC_001847.1 + 118422 0.66 0.660803
Target:  5'- cUGCUGUUUUCGCugGUGaUCGUGCuCGUCu -3'
miRNA:   3'- -ACGGCGAGGGCG--UAC-AGCGCGuGCAG- -5'
6499 3' -60.2 NC_001847.1 + 84674 0.66 0.670833
Target:  5'- cGCCGCU--UGC-UGUCGCGCgGCGcUCa -3'
miRNA:   3'- aCGGCGAggGCGuACAGCGCG-UGC-AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.