Results 1 - 20 of 327 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6499 | 3' | -60.2 | NC_001847.1 | + | 13966 | 1 | 0.004513 |
Target: 5'- gUGCCGC-CCCGCAUGUCGCGCACGUCc -3' miRNA: 3'- -ACGGCGaGGGCGUACAGCGCGUGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 74332 | 0.78 | 0.147017 |
Target: 5'- gUGCCGCUgCCGCAgg-CGCGCGCGc- -3' miRNA: 3'- -ACGGCGAgGGCGUacaGCGCGUGCag -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 82845 | 0.78 | 0.158551 |
Target: 5'- cGCCGCccgcgCCCGCG-GUCGCGCACa-- -3' miRNA: 3'- aCGGCGa----GGGCGUaCAGCGCGUGcag -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 97794 | 0.78 | 0.158551 |
Target: 5'- cGCCaGCU-CCGCAcgGUCGCGCGCGUg -3' miRNA: 3'- aCGG-CGAgGGCGUa-CAGCGCGUGCAg -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 115090 | 0.78 | 0.160149 |
Target: 5'- cGCCGCUCCCGCAaacguacaguccagcUG-CGCGUaaaccaagcGCGUCg -3' miRNA: 3'- aCGGCGAGGGCGU---------------ACaGCGCG---------UGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 99903 | 0.77 | 0.184093 |
Target: 5'- cGCCGCgcgCCCGCcgGcCGCcugcaGCACGUCc -3' miRNA: 3'- aCGGCGa--GGGCGuaCaGCG-----CGUGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 80510 | 0.77 | 0.184093 |
Target: 5'- aGCCGCUCggcauagCGC-UGUCgGCGCACGUCg -3' miRNA: 3'- aCGGCGAGg------GCGuACAG-CGCGUGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 47863 | 0.76 | 0.193385 |
Target: 5'- gGCCGCgggCCGUcgG-CGCGCACGUCc -3' miRNA: 3'- aCGGCGag-GGCGuaCaGCGCGUGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 49035 | 0.75 | 0.240404 |
Target: 5'- aGCCGCUCgUGCAg--CGUGCGCGUa -3' miRNA: 3'- aCGGCGAGgGCGUacaGCGCGUGCAg -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 131659 | 0.75 | 0.234742 |
Target: 5'- cGCCGCUgCCGCcgGUCGgGgACGcCa -3' miRNA: 3'- aCGGCGAgGGCGuaCAGCgCgUGCaG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 62160 | 0.75 | 0.234742 |
Target: 5'- gGCCaGCUCCCGCGcGggCGCGUccGCGUCc -3' miRNA: 3'- aCGG-CGAGGGCGUaCa-GCGCG--UGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 28846 | 0.75 | 0.234742 |
Target: 5'- cGCCGCUgCCGCcgGUCGgGgACGcCa -3' miRNA: 3'- aCGGCGAgGGCGuaCAGCgCgUGCaG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 120470 | 0.74 | 0.264201 |
Target: 5'- cGCCGCg-CCGCcgGcCGCGC-CGUCg -3' miRNA: 3'- aCGGCGagGGCGuaCaGCGCGuGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 121201 | 0.74 | 0.283277 |
Target: 5'- gGCCGCagCCGCAgcUCGCGCAUGa- -3' miRNA: 3'- aCGGCGagGGCGUacAGCGCGUGCag -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 56824 | 0.74 | 0.264201 |
Target: 5'- aGCCGggCCCGCGg--CGCGCGCGcCg -3' miRNA: 3'- aCGGCgaGGGCGUacaGCGCGUGCaG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 116168 | 0.74 | 0.252071 |
Target: 5'- gGCCGCgggCgCCGCG-GcCGCGCugGUCg -3' miRNA: 3'- aCGGCGa--G-GGCGUaCaGCGCGugCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 47371 | 0.74 | 0.276799 |
Target: 5'- gGCCGCcccgguuuagcuUCCCGUAgccGUCGagcCGCACGUCg -3' miRNA: 3'- aCGGCG------------AGGGCGUa--CAGC---GCGUGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 64684 | 0.74 | 0.283277 |
Target: 5'- gGgCGC-CCgCGCGUGUCGCaGUGCGUCa -3' miRNA: 3'- aCgGCGaGG-GCGUACAGCG-CGUGCAG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 89121 | 0.73 | 0.32466 |
Target: 5'- cGCCGC-CCCGgugGUCGUGCGCG-Cg -3' miRNA: 3'- aCGGCGaGGGCguaCAGCGCGUGCaG- -5' |
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6499 | 3' | -60.2 | NC_001847.1 | + | 15580 | 0.73 | 0.317461 |
Target: 5'- cGCCGCUgCCCGCAgagucugGcCGCGCGCc-- -3' miRNA: 3'- aCGGCGA-GGGCGUa------CaGCGCGUGcag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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