miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 3' -60.2 NC_001847.1 + 134520 0.68 0.58041
Target:  5'- gGCCGCgg-CGCAUGUgGUgguacacgggGCGCGUCg -3'
miRNA:   3'- aCGGCGaggGCGUACAgCG----------CGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 132948 0.72 0.33942
Target:  5'- cUGCCGC-CCCGag-GUCGCgGCGCGg- -3'
miRNA:   3'- -ACGGCGaGGGCguaCAGCG-CGUGCag -5'
6499 3' -60.2 NC_001847.1 + 132821 0.71 0.394828
Target:  5'- cGCCGCUgCCCGCccG-CGUGCugGg- -3'
miRNA:   3'- aCGGCGA-GGGCGuaCaGCGCGugCag -5'
6499 3' -60.2 NC_001847.1 + 132123 0.67 0.620541
Target:  5'- aGCUGCUcggcgcggCCCGCgacgcgGUGgagCGCGCGCGg- -3'
miRNA:   3'- aCGGCGA--------GGGCG------UACa--GCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 132047 0.66 0.700706
Target:  5'- gGCCGCggCCUGCcgGcCGCggccuGCGCGcCg -3'
miRNA:   3'- aCGGCGa-GGGCGuaCaGCG-----CGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 131869 0.67 0.650751
Target:  5'- cGCCGUgCUCGCcgGcCGCGCgGCGcCg -3'
miRNA:   3'- aCGGCGaGGGCGuaCaGCGCG-UGCaG- -5'
6499 3' -60.2 NC_001847.1 + 131659 0.75 0.234742
Target:  5'- cGCCGCUgCCGCcgGUCGgGgACGcCa -3'
miRNA:   3'- aCGGCGAgGGCGuaCAGCgCgUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 131444 0.66 0.670833
Target:  5'- gGCCGCggggCCCGCGgccgUGuUCGUGC-CGg- -3'
miRNA:   3'- aCGGCGa---GGGCGU----AC-AGCGCGuGCag -5'
6499 3' -60.2 NC_001847.1 + 131415 0.67 0.60043
Target:  5'- gGCCGCgugCgCGcCGUGgccggCGCGCGCGa- -3'
miRNA:   3'- aCGGCGa--GgGC-GUACa----GCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 130601 0.72 0.34698
Target:  5'- cGCCGCgccaCCCGCGggcgGcCGCcgcgagGCACGUCg -3'
miRNA:   3'- aCGGCGa---GGGCGUa---CaGCG------CGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 129918 0.66 0.660803
Target:  5'- uUGCCGCgcgcgcCCCGCcgGcCGC-CGCGg- -3'
miRNA:   3'- -ACGGCGa-----GGGCGuaCaGCGcGUGCag -5'
6499 3' -60.2 NC_001847.1 + 129032 0.68 0.590405
Target:  5'- aGgCGCUCgcgCCGCGccUCGCGgGCGUCu -3'
miRNA:   3'- aCgGCGAG---GGCGUacAGCGCgUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 128810 0.67 0.610477
Target:  5'- uUGCCGCcggggcaCCCGCGUacgugGcCGCGCGCaUCg -3'
miRNA:   3'- -ACGGCGa------GGGCGUA-----CaGCGCGUGcAG- -5'
6499 3' -60.2 NC_001847.1 + 126525 0.66 0.660803
Target:  5'- gGCCGCUCCCccgGCGggGcUUGCGCuGCGg- -3'
miRNA:   3'- aCGGCGAGGG---CGUa-C-AGCGCG-UGCag -5'
6499 3' -60.2 NC_001847.1 + 125055 0.68 0.590405
Target:  5'- cGCCGCUUgUGCucc-CGCGCGCGg- -3'
miRNA:   3'- aCGGCGAGgGCGuacaGCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 125001 0.67 0.640685
Target:  5'- aGCC-CUCCCGC---UCGCGCuACGg- -3'
miRNA:   3'- aCGGcGAGGGCGuacAGCGCG-UGCag -5'
6499 3' -60.2 NC_001847.1 + 124974 0.67 0.630612
Target:  5'- cGCUGCUUaaGC----CGCGCGCGUCg -3'
miRNA:   3'- aCGGCGAGggCGuacaGCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 124295 0.67 0.610477
Target:  5'- cGCCGCgccucggCCaCGCGccgccGUCGCGCGCa-- -3'
miRNA:   3'- aCGGCGa------GG-GCGUa----CAGCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 123589 0.66 0.660803
Target:  5'- aGCCGCaCCCGC-UGg-GCGCAC-UCc -3'
miRNA:   3'- aCGGCGaGGGCGuACagCGCGUGcAG- -5'
6499 3' -60.2 NC_001847.1 + 122533 0.68 0.560533
Target:  5'- gUGCCGCccggacCCUGCcgGUCGCuggccGCACGa- -3'
miRNA:   3'- -ACGGCGa-----GGGCGuaCAGCG-----CGUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.