miRNA display CGI


Results 41 - 60 of 695 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 5' -57.1 NC_001847.1 + 4663 0.67 0.781266
Target:  5'- -cGACGCGCCGcgucGAGCAgGGCcgGGUc- -3'
miRNA:   3'- auUUGCGCGGCu---CUCGUgCCG--UCGuc -5'
6499 5' -57.1 NC_001847.1 + 4859 0.67 0.742733
Target:  5'- -uAugGCGCCGGGAcggGCACaGCcacGCGGa -3'
miRNA:   3'- auUugCGCGGCUCU---CGUGcCGu--CGUC- -5'
6499 5' -57.1 NC_001847.1 + 4967 0.77 0.237932
Target:  5'- --cGCGCGCCGGGggggcAGCugGGguGCGGc -3'
miRNA:   3'- auuUGCGCGGCUC-----UCGugCCguCGUC- -5'
6499 5' -57.1 NC_001847.1 + 4994 0.69 0.661505
Target:  5'- --nGCG-GCCGcGGcaaAGCGCGGCGGCGGc -3'
miRNA:   3'- auuUGCgCGGC-UC---UCGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 5071 0.81 0.135874
Target:  5'- -cGGCGgGCCGGGAGCG-GGCGGCAGu -3'
miRNA:   3'- auUUGCgCGGCUCUCGUgCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 5189 0.79 0.190038
Target:  5'- gGAACaGCGCCGcGAGCGCGGCAaGCGc -3'
miRNA:   3'- aUUUG-CGCGGCuCUCGUGCCGU-CGUc -5'
6499 5' -57.1 NC_001847.1 + 5223 0.69 0.630389
Target:  5'- -cGGCG-GCCGgcGGGGCGCGcGCGGCAa -3'
miRNA:   3'- auUUGCgCGGC--UCUCGUGC-CGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 5456 0.67 0.781266
Target:  5'- cAAGCGCGuCCcGGccgcucucugcGGCgGCGGCAGCGGc -3'
miRNA:   3'- aUUUGCGC-GGcUC-----------UCG-UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 5543 0.67 0.762237
Target:  5'- ---uCGCaCCGGcGGCgGCGGCAGCAGc -3'
miRNA:   3'- auuuGCGcGGCUcUCG-UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 5600 0.66 0.82627
Target:  5'- aAAGCGCGCCGcggcGGAGguacaguCGGUGGCGa -3'
miRNA:   3'- aUUUGCGCGGC----UCUCgu-----GCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 5668 0.79 0.17606
Target:  5'- --uGCGCGCCGucGcGCGCGGCGGCGGc -3'
miRNA:   3'- auuUGCGCGGCu-CuCGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 5820 0.7 0.588954
Target:  5'- -uGGCGCGCCG--GGUGCGuGCAGCAc -3'
miRNA:   3'- auUUGCGCGGCucUCGUGC-CGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 6127 0.67 0.741747
Target:  5'- cGAGCGCcucGCCGccaucggGGGGCuCGGUGGCGGu -3'
miRNA:   3'- aUUUGCG---CGGC-------UCUCGuGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 6358 0.77 0.232148
Target:  5'- ---cCGCGCCGcGGGCguagccgcuGCGGCAGCAGa -3'
miRNA:   3'- auuuGCGCGGCuCUCG---------UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 6947 0.68 0.702609
Target:  5'- aAGACGgGCCaggcgcGGGGuCGCGGCGGCGc -3'
miRNA:   3'- aUUUGCgCGGc-----UCUC-GUGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 7197 0.71 0.537931
Target:  5'- gGAGCGCGuCCucGAGCGCGGCugGGCc- -3'
miRNA:   3'- aUUUGCGC-GGcuCUCGUGCCG--UCGuc -5'
6499 5' -57.1 NC_001847.1 + 7261 0.71 0.527896
Target:  5'- cGGGCGCGgCGGGGGCACGcgagacgcuccGCAGUAc -3'
miRNA:   3'- aUUUGCGCgGCUCUCGUGC-----------CGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 7613 0.67 0.732827
Target:  5'- gUGGGCGCuGUgGAGGGCacgACGGaCAGCAu -3'
miRNA:   3'- -AUUUGCG-CGgCUCUCG---UGCC-GUCGUc -5'
6499 5' -57.1 NC_001847.1 + 7708 0.72 0.450562
Target:  5'- gGAGCGCGCCuuGGGCAUucaGGC-GCAGg -3'
miRNA:   3'- aUUUGCGCGGcuCUCGUG---CCGuCGUC- -5'
6499 5' -57.1 NC_001847.1 + 7896 0.72 0.4599
Target:  5'- cUAGcCGCGCgGGGcGCGCGGCGGCc- -3'
miRNA:   3'- -AUUuGCGCGgCUCuCGUGCCGUCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.