miRNA display CGI


Results 21 - 40 of 695 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 5' -57.1 NC_001847.1 + 2939 0.69 0.67184
Target:  5'- -cAGCGCgGCCGccuccAGCGCGGCGGCc- -3'
miRNA:   3'- auUUGCG-CGGCuc---UCGUGCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 2987 0.66 0.799744
Target:  5'- aUGuuCGCgGCCccacccuGCGCGGCAGCAGc -3'
miRNA:   3'- -AUuuGCG-CGGcucu---CGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 3030 0.75 0.316992
Target:  5'- ---cCGCGCCGAGcAGCuCGGCGGCc- -3'
miRNA:   3'- auuuGCGCGGCUC-UCGuGCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 3067 0.67 0.781266
Target:  5'- cGggUGCGCCGccAGCGCguccGGCGcGCAGg -3'
miRNA:   3'- aUuuGCGCGGCucUCGUG----CCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 3123 0.73 0.405504
Target:  5'- ---cCGCgGCCGAGAGCAccgggagccCGGCGGCGc -3'
miRNA:   3'- auuuGCG-CGGCUCUCGU---------GCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 3241 0.71 0.508042
Target:  5'- ---cCGCGCCGuGcucGC-CGGCGGCAGg -3'
miRNA:   3'- auuuGCGCGGCuCu--CGuGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 3277 0.79 0.19491
Target:  5'- --cGCGCgGCCGGcGAGCACGGCGcGCAGc -3'
miRNA:   3'- auuUGCG-CGGCU-CUCGUGCCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 3377 0.69 0.644922
Target:  5'- --cGCGCGCCGAGccGCGCaaagcccuccgcaaGCAGCGGg -3'
miRNA:   3'- auuUGCGCGGCUCu-CGUGc-------------CGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 3482 0.68 0.682142
Target:  5'- -cGGCGCGCCGAGAGCucgcacAUGaGCcGCGc -3'
miRNA:   3'- auUUGCGCGGCUCUCG------UGC-CGuCGUc -5'
6499 5' -57.1 NC_001847.1 + 3541 0.78 0.215503
Target:  5'- --uACG-GCCGcGAGCGCGGCGGCGGc -3'
miRNA:   3'- auuUGCgCGGCuCUCGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 3725 0.66 0.817599
Target:  5'- --cGCGCGCCGGc--CACGGCGcGCAc -3'
miRNA:   3'- auuUGCGCGGCUcucGUGCCGU-CGUc -5'
6499 5' -57.1 NC_001847.1 + 3790 0.67 0.741747
Target:  5'- --cGCGcCGCCGAagcgcacgcggccGGGCgGCGGCGGCGc -3'
miRNA:   3'- auuUGC-GCGGCU-------------CUCG-UGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 3804 0.67 0.742733
Target:  5'- -cGGCGUGCCGgcacGGGGCGuCGGCcGCGa -3'
miRNA:   3'- auUUGCGCGGC----UCUCGU-GCCGuCGUc -5'
6499 5' -57.1 NC_001847.1 + 3862 0.68 0.712756
Target:  5'- gUAGACgGCGCCGGGGcuGCGCaGCucccAGCGGa -3'
miRNA:   3'- -AUUUG-CGCGGCUCU--CGUGcCG----UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 3912 0.68 0.701591
Target:  5'- cGGugGCGCgGAcGcacgcacAGCGCuGGCAGCGGg -3'
miRNA:   3'- aUUugCGCGgCU-C-------UCGUG-CCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 3928 0.66 0.83476
Target:  5'- --uGCGCGCCcgcgcuGGCGCcGCGGCGGg -3'
miRNA:   3'- auuUGCGCGGcuc---UCGUGcCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 3976 0.74 0.387444
Target:  5'- cGAGgGCGCCGGGGGCcgggcgcGCGGCcccGCGGg -3'
miRNA:   3'- aUUUgCGCGGCUCUCG-------UGCCGu--CGUC- -5'
6499 5' -57.1 NC_001847.1 + 3976 0.69 0.651146
Target:  5'- gAggUGgGCCGuGAGCACGcCAGCGc -3'
miRNA:   3'- aUuuGCgCGGCuCUCGUGCcGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 4189 0.66 0.817599
Target:  5'- --cGCGCGcCCGuGGGcCGCGcGCAGgCAGc -3'
miRNA:   3'- auuUGCGC-GGCuCUC-GUGC-CGUC-GUC- -5'
6499 5' -57.1 NC_001847.1 + 4239 0.71 0.54803
Target:  5'- --cGCGCGCCGGcacGAGCuGCGcCAGCAGc -3'
miRNA:   3'- auuUGCGCGGCU---CUCG-UGCcGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.