miRNA display CGI


Results 21 - 40 of 695 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 5' -57.1 NC_001847.1 + 125257 0.66 0.799744
Target:  5'- --cACGCgGUCGGGcgagcGGCAgaGGCGGCAGg -3'
miRNA:   3'- auuUGCG-CGGCUC-----UCGUg-CCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 33234 0.66 0.817599
Target:  5'- ---cCGCGCCGGGcGcCGCGGCGccuccgcugccGCGGu -3'
miRNA:   3'- auuuGCGCGGCUCuC-GUGCCGU-----------CGUC- -5'
6499 5' -57.1 NC_001847.1 + 47237 0.66 0.817599
Target:  5'- ----gGCGuuGAGcuuguAGCugGGCAGCu- -3'
miRNA:   3'- auuugCGCggCUC-----UCGugCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 35713 0.66 0.799744
Target:  5'- aGGAgGCGCCG-GAGCugGacguggccGCGGUGGa -3'
miRNA:   3'- aUUUgCGCGGCuCUCGugC--------CGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 104434 0.66 0.817599
Target:  5'- ---cUGCGCCGcGGcAGCaccGCGGCGcGCAGg -3'
miRNA:   3'- auuuGCGCGGC-UC-UCG---UGCCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 100541 0.66 0.790578
Target:  5'- gUGggUGgGCgGGGAGC-CGGCcGCGGc -3'
miRNA:   3'- -AUuuGCgCGgCUCUCGuGCCGuCGUC- -5'
6499 5' -57.1 NC_001847.1 + 50105 0.66 0.806068
Target:  5'- ---cCGCGCCGGGcggcguagagcgccGGCuggccucggugAUGGCGGCGGa -3'
miRNA:   3'- auuuGCGCGGCUC--------------UCG-----------UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 86002 0.66 0.808754
Target:  5'- --cGCGCGCCGAuGGGCuCGGgcaagacgaCGGCAc -3'
miRNA:   3'- auuUGCGCGGCU-CUCGuGCC---------GUCGUc -5'
6499 5' -57.1 NC_001847.1 + 130599 0.66 0.817599
Target:  5'- -cGACgGCGCCG-GAGaCGCGGgGGCc- -3'
miRNA:   3'- auUUG-CGCGGCuCUC-GUGCCgUCGuc -5'
6499 5' -57.1 NC_001847.1 + 2987 0.66 0.799744
Target:  5'- aUGuuCGCgGCCccacccuGCGCGGCAGCAGc -3'
miRNA:   3'- -AUuuGCG-CGGcucu---CGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 18601 0.66 0.823687
Target:  5'- -uAGCGCGCCGuccgcGGCGuCGGCgcgcgcguagcgcaGGCAGa -3'
miRNA:   3'- auUUGCGCGGCuc---UCGU-GCCG--------------UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 134539 0.66 0.799744
Target:  5'- --cGCGCGCCGcu-GCggaGCGGCcGCGGa -3'
miRNA:   3'- auuUGCGCGGCucuCG---UGCCGuCGUC- -5'
6499 5' -57.1 NC_001847.1 + 13015 0.66 0.817599
Target:  5'- ---cUGUGCCGAGcAGUagACGGC-GCAGc -3'
miRNA:   3'- auuuGCGCGGCUC-UCG--UGCCGuCGUC- -5'
6499 5' -57.1 NC_001847.1 + 53849 0.66 0.799744
Target:  5'- -cGGCgGCGCUGGcGGCGCuGGCGGCGc -3'
miRNA:   3'- auUUG-CGCGGCUcUCGUG-CCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 19807 0.66 0.817599
Target:  5'- gAGGCgGUGgCGGuGGCGgGGCGGCAGa -3'
miRNA:   3'- aUUUG-CGCgGCUcUCGUgCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 133948 0.66 0.808754
Target:  5'- -uGGCGC-CCGAcGAGCugccggccGCGGCGGUGGc -3'
miRNA:   3'- auUUGCGcGGCU-CUCG--------UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 54533 0.66 0.808754
Target:  5'- gGGGC-CGuCCGGGGGCGCaGaCGGCGGg -3'
miRNA:   3'- aUUUGcGC-GGCUCUCGUGcC-GUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 119939 0.66 0.817599
Target:  5'- --uACGCGCCG---GCGCGGU-GCGGg -3'
miRNA:   3'- auuUGCGCGGCucuCGUGCCGuCGUC- -5'
6499 5' -57.1 NC_001847.1 + 15057 0.66 0.825411
Target:  5'- cGAGCGCcaucugaccggcgGCCcGGGGaucGCcuGCGGCAGCGGg -3'
miRNA:   3'- aUUUGCG-------------CGG-CUCU---CG--UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 32882 0.66 0.808754
Target:  5'- ----gGCGCUgGAGGGCACGGUGcGCGc -3'
miRNA:   3'- auuugCGCGG-CUCUCGUGCCGU-CGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.