miRNA display CGI


Results 1 - 20 of 695 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 5' -57.1 NC_001847.1 + 134539 0.66 0.799744
Target:  5'- --cGCGCGCCGcu-GCggaGCGGCcGCGGa -3'
miRNA:   3'- auuUGCGCGGCucuCG---UGCCGuCGUC- -5'
6499 5' -57.1 NC_001847.1 + 10773 0.66 0.799744
Target:  5'- --uGCGCGCgCGGGAagaGCGGUAcGCGGg -3'
miRNA:   3'- auuUGCGCG-GCUCUcg-UGCCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 87600 0.66 0.799744
Target:  5'- gAGGCcgGCGCCGuuGAG-ACGGCGGCu- -3'
miRNA:   3'- aUUUG--CGCGGCu-CUCgUGCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 68335 0.66 0.799744
Target:  5'- aGAACGCGCCGcucGGCGucgUGGUAGCc- -3'
miRNA:   3'- aUUUGCGCGGCuc-UCGU---GCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 67716 0.66 0.798834
Target:  5'- cGAGCGCGCCGuagcAGcuggccaugccccAGCGCGaCAGCAa -3'
miRNA:   3'- aUUUGCGCGGC----UC-------------UCGUGCcGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 100541 0.66 0.790578
Target:  5'- gUGggUGgGCgGGGAGC-CGGCcGCGGc -3'
miRNA:   3'- -AUuuGCgCGgCUCUCGuGCCGuCGUC- -5'
6499 5' -57.1 NC_001847.1 + 79744 0.66 0.799744
Target:  5'- uUGAACGUGgCGAGcgccAGCGCGaucaGCGGCAc -3'
miRNA:   3'- -AUUUGCGCgGCUC----UCGUGC----CGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 35713 0.66 0.799744
Target:  5'- aGGAgGCGCCG-GAGCugGacguggccGCGGUGGa -3'
miRNA:   3'- aUUUgCGCGGCuCUCGugC--------CGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 53849 0.66 0.799744
Target:  5'- -cGGCgGCGCUGGcGGCGCuGGCGGCGc -3'
miRNA:   3'- auUUG-CGCGGCUcUCGUG-CCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 54533 0.66 0.808754
Target:  5'- gGGGC-CGuCCGGGGGCGCaGaCGGCGGg -3'
miRNA:   3'- aUUUGcGC-GGCUCUCGUGcC-GUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 50105 0.66 0.806068
Target:  5'- ---cCGCGCCGGGcggcguagagcgccGGCuggccucggugAUGGCGGCGGa -3'
miRNA:   3'- auuuGCGCGGCUC--------------UCG-----------UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 132264 0.66 0.799744
Target:  5'- -cGACGCGC----GGCGCGGCGGCc- -3'
miRNA:   3'- auUUGCGCGgcucUCGUGCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 18845 0.66 0.790578
Target:  5'- --cGCGCGCCGcacgggucagcGGGGCACGcugccucgccgaGCGGCGc -3'
miRNA:   3'- auuUGCGCGGC-----------UCUCGUGC------------CGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 59248 0.66 0.803367
Target:  5'- cGAugGCGCCGgccAGGGCcaugauuuggcucucGagcccCGGCGGCGGg -3'
miRNA:   3'- aUUugCGCGGC---UCUCG---------------U-----GCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 68275 0.66 0.790578
Target:  5'- uUGGGCGCGuacacgaagcCCGAGAGCGCGuuGGUg- -3'
miRNA:   3'- -AUUUGCGC----------GGCUCUCGUGCcgUCGuc -5'
6499 5' -57.1 NC_001847.1 + 125257 0.66 0.799744
Target:  5'- --cACGCgGUCGGGcgagcGGCAgaGGCGGCAGg -3'
miRNA:   3'- auuUGCG-CGGCUC-----UCGUg-CCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 35172 0.66 0.799744
Target:  5'- --uAC-CGCCGGGGGCAC-GCGGCc- -3'
miRNA:   3'- auuUGcGCGGCUCUCGUGcCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 2987 0.66 0.799744
Target:  5'- aUGuuCGCgGCCccacccuGCGCGGCAGCAGc -3'
miRNA:   3'- -AUuuGCG-CGGcucu---CGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 93281 0.66 0.790578
Target:  5'- ---uCGCGCCGcGAuGUcgGCGGCGcGCAGg -3'
miRNA:   3'- auuuGCGCGGCuCU-CG--UGCCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 29323 0.66 0.799744
Target:  5'- cAAGCGaGCCGcGAGCGCGaGUGcGCGGg -3'
miRNA:   3'- aUUUGCgCGGCuCUCGUGC-CGU-CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.