miRNA display CGI


Results 1 - 20 of 695 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 5' -57.1 NC_001847.1 + 132792 0.76 0.281846
Target:  5'- -cGACGCgGCCGGGccGGCGCGGCGGgAGc -3'
miRNA:   3'- auUUGCG-CGGCUC--UCGUGCCGUCgUC- -5'
6499 5' -57.1 NC_001847.1 + 76398 0.78 0.215503
Target:  5'- gGGGgGCGCCGGGGGcCGCGGCGGgGGc -3'
miRNA:   3'- aUUUgCGCGGCUCUC-GUGCCGUCgUC- -5'
6499 5' -57.1 NC_001847.1 + 85722 0.78 0.220934
Target:  5'- ----aGCGCC-AGuGCACGGCGGCAGg -3'
miRNA:   3'- auuugCGCGGcUCuCGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 124936 0.78 0.220934
Target:  5'- cGGGCGCGCCcuGGGCcCGGCGGCGGc -3'
miRNA:   3'- aUUUGCGCGGcuCUCGuGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 6358 0.77 0.232148
Target:  5'- ---cCGCGCCGcGGGCguagccgcuGCGGCAGCAGa -3'
miRNA:   3'- auuuGCGCGGCuCUCG---------UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 96847 0.77 0.237932
Target:  5'- aGGGCGCGUCGGGGGCGgcggugGGCGGCGGu -3'
miRNA:   3'- aUUUGCGCGGCUCUCGUg-----CCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 104076 0.77 0.246232
Target:  5'- -cGGCGCGCCGAGcccccagcgguuggcGGCGCGGUGGCuGg -3'
miRNA:   3'- auUUGCGCGGCUC---------------UCGUGCCGUCGuC- -5'
6499 5' -57.1 NC_001847.1 + 36075 0.77 0.262282
Target:  5'- cAGGCGCGCUG-GAcGCGCGGCuGGCGGa -3'
miRNA:   3'- aUUUGCGCGGCuCU-CGUGCCG-UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 53816 0.76 0.268678
Target:  5'- aAGGCGUGUCGcGGGCGCGGCuGGCGGc -3'
miRNA:   3'- aUUUGCGCGGCuCUCGUGCCG-UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 3541 0.78 0.215503
Target:  5'- --uACG-GCCGcGAGCGCGGCGGCGGc -3'
miRNA:   3'- auuUGCgCGGCuCUCGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 115683 0.78 0.214966
Target:  5'- gGAGCGCGCgGcGGAGCGgcuggccCGGCAGCGGg -3'
miRNA:   3'- aUUUGCGCGgC-UCUCGU-------GCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 100858 0.78 0.210186
Target:  5'- gGAGCGCcggcccGCCGGGGGU-CGGCGGCAGg -3'
miRNA:   3'- aUUUGCG------CGGCUCUCGuGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 34657 0.83 0.101529
Target:  5'- -cGGCGCGCCGAGGGgGCGGCcgcgcagcGGCAGg -3'
miRNA:   3'- auUUGCGCGGCUCUCgUGCCG--------UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 107884 0.81 0.135874
Target:  5'- -cGGCGgGCCGGGAGCG-GGCGGCAGu -3'
miRNA:   3'- auUUGCgCGGCUCUCGUgCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 73181 0.81 0.146952
Target:  5'- ---cCGCGCCGGcGGGCACGGCGcGCGGg -3'
miRNA:   3'- auuuGCGCGGCU-CUCGUGCCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 5668 0.79 0.17606
Target:  5'- --uGCGCGCCGucGcGCGCGGCGGCGGc -3'
miRNA:   3'- auuUGCGCGGCu-CuCGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 5189 0.79 0.190038
Target:  5'- gGAACaGCGCCGcGAGCGCGGCAaGCGc -3'
miRNA:   3'- aUUUG-CGCGGCuCUCGUGCCGU-CGUc -5'
6499 5' -57.1 NC_001847.1 + 106090 0.79 0.19491
Target:  5'- --cGCGCgGCCGGcGAGCACGGCGcGCAGc -3'
miRNA:   3'- auuUGCG-CGGCU-CUCGUGCCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 77582 0.78 0.199891
Target:  5'- --cGCGgGCCGAGcucGCACGGCGGCAc -3'
miRNA:   3'- auuUGCgCGGCUCu--CGUGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 44434 0.78 0.204983
Target:  5'- cGuuCGCGCaCGGGGGCGCGGCGcGCGGc -3'
miRNA:   3'- aUuuGCGCG-GCUCUCGUGCCGU-CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.