miRNA display CGI


Results 1 - 20 of 695 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 5' -57.1 NC_001847.1 + 14000 1.08 0.002057
Target:  5'- gUAAACGCGCCGAGAGCACGGCAGCAGg -3'
miRNA:   3'- -AUUUGCGCGGCUCUCGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 47583 0.83 0.101529
Target:  5'- --cACGCGCCGAGgaaGGC-CGGCGGCAGg -3'
miRNA:   3'- auuUGCGCGGCUC---UCGuGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 34657 0.83 0.101529
Target:  5'- -cGGCGCGCCGAGGGgGCGGCcgcgcagcGGCAGg -3'
miRNA:   3'- auUUGCGCGGCUCUCgUGCCG--------UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 74161 0.81 0.132355
Target:  5'- -cGACgGCGCCGuGGGCGCGcGCAGCGGg -3'
miRNA:   3'- auUUG-CGCGGCuCUCGUGC-CGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 107884 0.81 0.135874
Target:  5'- -cGGCGgGCCGGGAGCG-GGCGGCAGu -3'
miRNA:   3'- auUUGCgCGGCUCUCGUgCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 5071 0.81 0.135874
Target:  5'- -cGGCGgGCCGGGAGCG-GGCGGCAGu -3'
miRNA:   3'- auUUGCgCGGCUCUCGUgCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 73181 0.81 0.146952
Target:  5'- ---cCGCGCCGGcGGGCACGGCGcGCGGg -3'
miRNA:   3'- auuuGCGCGGCU-CUCGUGCCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 5668 0.79 0.17606
Target:  5'- --uGCGCGCCGucGcGCGCGGCGGCGGc -3'
miRNA:   3'- auuUGCGCGGCu-CuCGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 73159 0.79 0.17606
Target:  5'- -cGGCGCGCCGGGcggaggaggcGGaCGCGGCGGCGGa -3'
miRNA:   3'- auUUGCGCGGCUC----------UC-GUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 5189 0.79 0.190038
Target:  5'- gGAACaGCGCCGcGAGCGCGGCAaGCGc -3'
miRNA:   3'- aUUUG-CGCGGCuCUCGUGCCGU-CGUc -5'
6499 5' -57.1 NC_001847.1 + 76713 0.79 0.19491
Target:  5'- gAGGCGCGCCGGGaAGgACGGUcgGGCGGg -3'
miRNA:   3'- aUUUGCGCGGCUC-UCgUGCCG--UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 106090 0.79 0.19491
Target:  5'- --cGCGCgGCCGGcGAGCACGGCGcGCAGc -3'
miRNA:   3'- auuUGCG-CGGCU-CUCGUGCCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 3277 0.79 0.19491
Target:  5'- --cGCGCgGCCGGcGAGCACGGCGcGCAGc -3'
miRNA:   3'- auuUGCG-CGGCU-CUCGUGCCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 77582 0.78 0.199891
Target:  5'- --cGCGgGCCGAGcucGCACGGCGGCAc -3'
miRNA:   3'- auuUGCgCGGCUCu--CGUGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 44434 0.78 0.204983
Target:  5'- cGuuCGCGCaCGGGGGCGCGGCGcGCGGc -3'
miRNA:   3'- aUuuGCGCG-GCUCUCGUGCCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 47691 0.78 0.210186
Target:  5'- --cGCGCGCCGcggggccguuGAGCGCGcGCAGCAGc -3'
miRNA:   3'- auuUGCGCGGCu---------CUCGUGC-CGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 100858 0.78 0.210186
Target:  5'- gGAGCGCcggcccGCCGGGGGU-CGGCGGCAGg -3'
miRNA:   3'- aUUUGCG------CGGCUCUCGuGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 115683 0.78 0.214966
Target:  5'- gGAGCGCGCgGcGGAGCGgcuggccCGGCAGCGGg -3'
miRNA:   3'- aUUUGCGCGgC-UCUCGU-------GCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 76398 0.78 0.215503
Target:  5'- gGGGgGCGCCGGGGGcCGCGGCGGgGGc -3'
miRNA:   3'- aUUUgCGCGGCUCUC-GUGCCGUCgUC- -5'
6499 5' -57.1 NC_001847.1 + 3541 0.78 0.215503
Target:  5'- --uACG-GCCGcGAGCGCGGCGGCGGc -3'
miRNA:   3'- auuUGCgCGGCuCUCGUGCCGUCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.