miRNA display CGI


Results 21 - 40 of 695 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 5' -57.1 NC_001847.1 + 22123 0.78 0.220934
Target:  5'- cGGGCGCGCCcuGGGCcCGGCGGCGGc -3'
miRNA:   3'- aUUUGCGCGGcuCUCGuGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 85722 0.78 0.220934
Target:  5'- ----aGCGCC-AGuGCACGGCGGCAGg -3'
miRNA:   3'- auuugCGCGGcUCuCGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 124936 0.78 0.220934
Target:  5'- cGGGCGCGCCcuGGGCcCGGCGGCGGc -3'
miRNA:   3'- aUUUGCGCGGcuCUCGuGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 6358 0.77 0.232148
Target:  5'- ---cCGCGCCGcGGGCguagccgcuGCGGCAGCAGa -3'
miRNA:   3'- auuuGCGCGGCuCUCG---------UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 96847 0.77 0.237932
Target:  5'- aGGGCGCGUCGGGGGCGgcggugGGCGGCGGu -3'
miRNA:   3'- aUUUGCGCGGCUCUCGUg-----CCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 4967 0.77 0.237932
Target:  5'- --cGCGCGCCGGGggggcAGCugGGguGCGGc -3'
miRNA:   3'- auuUGCGCGGCUC-----UCGugCCguCGUC- -5'
6499 5' -57.1 NC_001847.1 + 111669 0.77 0.243836
Target:  5'- --cGCGCGCCGAGcGCGauggccgaGGCGGCGGa -3'
miRNA:   3'- auuUGCGCGGCUCuCGUg-------CCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 104076 0.77 0.246232
Target:  5'- -cGGCGCGCCGAGcccccagcgguuggcGGCGCGGUGGCuGg -3'
miRNA:   3'- auUUGCGCGGCUC---------------UCGUGCCGUCGuC- -5'
6499 5' -57.1 NC_001847.1 + 1263 0.77 0.246232
Target:  5'- -cGGCGCGCCGAGcccccagcgguuggcGGCGCGGUGGCuGg -3'
miRNA:   3'- auUUGCGCGGCUC---------------UCGUGCCGUCGuC- -5'
6499 5' -57.1 NC_001847.1 + 102683 0.77 0.249254
Target:  5'- aUGAACGCGCUGGcGGGCgugugcuGCGGCAGCGc -3'
miRNA:   3'- -AUUUGCGCGGCU-CUCG-------UGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 33674 0.77 0.25539
Target:  5'- -uAGCGCGCCGcccuugcGGccGCGCGGCGGCAGu -3'
miRNA:   3'- auUUGCGCGGC-------UCu-CGUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 120686 0.77 0.25601
Target:  5'- gGAGCGCacGCCGAGcAGCGCGGCcGCGc -3'
miRNA:   3'- aUUUGCG--CGGCUC-UCGUGCCGuCGUc -5'
6499 5' -57.1 NC_001847.1 + 133976 0.77 0.25601
Target:  5'- aAGGCGCcgggGCUGGGAGCGCGcGCGGCAu -3'
miRNA:   3'- aUUUGCG----CGGCUCUCGUGC-CGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 36075 0.77 0.262282
Target:  5'- cAGGCGCGCUG-GAcGCGCGGCuGGCGGa -3'
miRNA:   3'- aUUUGCGCGGCuCU-CGUGCCG-UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 14443 0.77 0.262282
Target:  5'- -cGACgGCGCCGGGGuGCGCGGCcGCGGc -3'
miRNA:   3'- auUUG-CGCGGCUCU-CGUGCCGuCGUC- -5'
6499 5' -57.1 NC_001847.1 + 53816 0.76 0.268678
Target:  5'- aAGGCGUGUCGcGGGCGCGGCuGGCGGc -3'
miRNA:   3'- aUUUGCGCGGCuCUCGUGCCG-UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 102108 0.76 0.268678
Target:  5'- cGAGCGCGUCcagcucggcgGAGAGgGCGGCGGCAc -3'
miRNA:   3'- aUUUGCGCGG----------CUCUCgUGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 71461 0.76 0.281846
Target:  5'- cGGGCGCuuCCGGGGGCAUGGCGGCc- -3'
miRNA:   3'- aUUUGCGc-GGCUCUCGUGCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 132792 0.76 0.281846
Target:  5'- -cGACGCgGCCGGGccGGCGCGGCGGgAGc -3'
miRNA:   3'- auUUGCG-CGGCUC--UCGUGCCGUCgUC- -5'
6499 5' -57.1 NC_001847.1 + 29979 0.76 0.281846
Target:  5'- -cGACGCgGCCGGGccGGCGCGGCGGgAGc -3'
miRNA:   3'- auUUGCG-CGGCUC--UCGUGCCGUCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.