miRNA display CGI


Results 21 - 40 of 695 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 5' -57.1 NC_001847.1 + 86536 0.66 0.83476
Target:  5'- --cGCGUGCUGGcGGCGCGGCuuaAGgGGg -3'
miRNA:   3'- auuUGCGCGGCUcUCGUGCCG---UCgUC- -5'
6499 5' -57.1 NC_001847.1 + 81586 0.66 0.83476
Target:  5'- ----aGCGCgGcGAGCGCGGCGuCGGu -3'
miRNA:   3'- auuugCGCGgCuCUCGUGCCGUcGUC- -5'
6499 5' -57.1 NC_001847.1 + 27990 0.66 0.83476
Target:  5'- ---cCGCGCUGGGccGCGCuGCAGCGc -3'
miRNA:   3'- auuuGCGCGGCUCu-CGUGcCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 52992 0.66 0.83476
Target:  5'- gGGACGCGCaggcauggcGGAGCcgacaGCGGCGGCc- -3'
miRNA:   3'- aUUUGCGCGgc-------UCUCG-----UGCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 19858 0.66 0.83476
Target:  5'- ---cCGCGcCCGGGGGCGcCGGCuuAGCc- -3'
miRNA:   3'- auuuGCGC-GGCUCUCGU-GCCG--UCGuc -5'
6499 5' -57.1 NC_001847.1 + 80627 0.66 0.83476
Target:  5'- --cGCGguUGCCGAuGGCgACGGCGGCGc -3'
miRNA:   3'- auuUGC--GCGGCUcUCG-UGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 66985 0.66 0.83476
Target:  5'- gAGGCGgGCUGc-GGCGCGGCgccggagaaggGGCAGa -3'
miRNA:   3'- aUUUGCgCGGCucUCGUGCCG-----------UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 59349 0.66 0.83476
Target:  5'- ----gGCaUCGGGGGCggaGCGGCGGCGGc -3'
miRNA:   3'- auuugCGcGGCUCUCG---UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 105709 0.66 0.83476
Target:  5'- --cGCGCGUCGAGuaccGCGCGaGCGGgGc -3'
miRNA:   3'- auuUGCGCGGCUCu---CGUGC-CGUCgUc -5'
6499 5' -57.1 NC_001847.1 + 8621 0.66 0.83476
Target:  5'- cAAGCccCGCCGGGGGaGCGGCcgcuGCGGa -3'
miRNA:   3'- aUUUGc-GCGGCUCUCgUGCCGu---CGUC- -5'
6499 5' -57.1 NC_001847.1 + 122228 0.66 0.83476
Target:  5'- --cGCGCGCCcccgcGGcGGCACGGCGcGCGc -3'
miRNA:   3'- auuUGCGCGGc----UC-UCGUGCCGU-CGUc -5'
6499 5' -57.1 NC_001847.1 + 69348 0.66 0.83476
Target:  5'- -uGGCgGCGCUGGugcuGGCGCGcGCGGCGGu -3'
miRNA:   3'- auUUG-CGCGGCUc---UCGUGC-CGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 94212 0.66 0.83476
Target:  5'- --uGCGCGCgGcGGAGCucGCGGCGGgGc -3'
miRNA:   3'- auuUGCGCGgC-UCUCG--UGCCGUCgUc -5'
6499 5' -57.1 NC_001847.1 + 86305 0.66 0.833919
Target:  5'- --cGCGCgGCCGAGGcgcccccGCGCGGCaaGGCc- -3'
miRNA:   3'- auuUGCG-CGGCUCU-------CGUGCCG--UCGuc -5'
6499 5' -57.1 NC_001847.1 + 10242 0.66 0.827127
Target:  5'- -cGGCGCGCCuGccgggcccgcuuuucGGAGCcgagugcgacgugaGCGGCAGCGa -3'
miRNA:   3'- auUUGCGCGG-C---------------UCUCG--------------UGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 113055 0.66 0.827127
Target:  5'- -cGGCGCGCCuGccgggcccgcuuuucGGAGCcgagugcgacgugaGCGGCAGCGa -3'
miRNA:   3'- auUUGCGCGG-C---------------UCUCG--------------UGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 58270 0.66 0.82627
Target:  5'- ----gGCGCCacccGGGCACGGCAGgGc -3'
miRNA:   3'- auuugCGCGGcu--CUCGUGCCGUCgUc -5'
6499 5' -57.1 NC_001847.1 + 92581 0.66 0.82627
Target:  5'- --cGCGcCGCCGAGgaGGaCGCGGCcGCGu -3'
miRNA:   3'- auuUGC-GCGGCUC--UC-GUGCCGuCGUc -5'
6499 5' -57.1 NC_001847.1 + 77040 0.66 0.82627
Target:  5'- ---cCGCGCCGcAGAaguaguagcgGCGCGGCAcccgcuGCGGc -3'
miRNA:   3'- auuuGCGCGGC-UCU----------CGUGCCGU------CGUC- -5'
6499 5' -57.1 NC_001847.1 + 34807 0.66 0.82627
Target:  5'- ---cCGCgGCCGcuGGCGCGGCAGg-- -3'
miRNA:   3'- auuuGCG-CGGCucUCGUGCCGUCguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.