miRNA display CGI


Results 41 - 60 of 695 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 5' -57.1 NC_001847.1 + 29052 0.66 0.82627
Target:  5'- cAGACGUGCUGcaggcgguGGGCugcgugGCGGUGGCGGg -3'
miRNA:   3'- aUUUGCGCGGCu-------CUCG------UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 59208 0.66 0.82627
Target:  5'- --cGCGUGUgGcGGcGCACGGCGGCGc -3'
miRNA:   3'- auuUGCGCGgCuCU-CGUGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 86756 0.66 0.82627
Target:  5'- --uGC-CGCCGAGgcccGGCcCGGCGGCGc -3'
miRNA:   3'- auuUGcGCGGCUC----UCGuGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 122198 0.66 0.82627
Target:  5'- --cGCGCGCCGccacacuagccGGGGC-CGGguGCc- -3'
miRNA:   3'- auuUGCGCGGC-----------UCUCGuGCCguCGuc -5'
6499 5' -57.1 NC_001847.1 + 34807 0.66 0.82627
Target:  5'- ---cCGCgGCCGcuGGCGCGGCAGg-- -3'
miRNA:   3'- auuuGCG-CGGCucUCGUGCCGUCguc -5'
6499 5' -57.1 NC_001847.1 + 108413 0.66 0.82627
Target:  5'- aAAGCGCGCCGcggcGGAGguacaguCGGUGGCGa -3'
miRNA:   3'- aUUUGCGCGGC----UCUCgu-----GCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 72603 0.66 0.82627
Target:  5'- aAAACGCGCUGcuGGccGCACGGCAcGUg- -3'
miRNA:   3'- aUUUGCGCGGC--UCu-CGUGCCGU-CGuc -5'
6499 5' -57.1 NC_001847.1 + 92581 0.66 0.82627
Target:  5'- --cGCGcCGCCGAGgaGGaCGCGGCcGCGu -3'
miRNA:   3'- auuUGC-GCGGCUC--UC-GUGCCGuCGUc -5'
6499 5' -57.1 NC_001847.1 + 5600 0.66 0.82627
Target:  5'- aAAGCGCGCCGcggcGGAGguacaguCGGUGGCGa -3'
miRNA:   3'- aUUUGCGCGGC----UCUCgu-----GCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 49063 0.66 0.82627
Target:  5'- --cACG-GCCGcGGGCgGCGGCAGCc- -3'
miRNA:   3'- auuUGCgCGGCuCUCG-UGCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 77040 0.66 0.82627
Target:  5'- ---cCGCGCCGcAGAaguaguagcgGCGCGGCAcccgcuGCGGc -3'
miRNA:   3'- auuuGCGCGGC-UCU----------CGUGCCGU------CGUC- -5'
6499 5' -57.1 NC_001847.1 + 42017 0.66 0.82627
Target:  5'- gAAGCuGCGCCGuGccGGCGCGGC-GCc- -3'
miRNA:   3'- aUUUG-CGCGGCuC--UCGUGCCGuCGuc -5'
6499 5' -57.1 NC_001847.1 + 79660 0.66 0.82627
Target:  5'- --cACGuCGCCcauAGCAgGGCAGCGGc -3'
miRNA:   3'- auuUGC-GCGGcucUCGUgCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 16614 0.66 0.82627
Target:  5'- --cAUGCGUgGucuuugggggGGGGCGCGGCGGCu- -3'
miRNA:   3'- auuUGCGCGgC----------UCUCGUGCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 22217 0.66 0.825411
Target:  5'- --cACGCGuCCGuGGGCGUGGCgcccguguagccgAGCAGg -3'
miRNA:   3'- auuUGCGC-GGCuCUCGUGCCG-------------UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 15057 0.66 0.825411
Target:  5'- cGAGCGCcaucugaccggcgGCCcGGGGaucGCcuGCGGCAGCGGg -3'
miRNA:   3'- aUUUGCG-------------CGG-CUCU---CG--UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 125030 0.66 0.825411
Target:  5'- --cACGCGuCCGuGGGCGUGGCgcccguguagccgAGCAGg -3'
miRNA:   3'- auuUGCGC-GGCuCUCGUGCCG-------------UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 38240 0.66 0.82455
Target:  5'- --uACGCgGCCGccagucccgcgcGAGCACGGCGGUc- -3'
miRNA:   3'- auuUGCG-CGGCu-----------CUCGUGCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 18601 0.66 0.823687
Target:  5'- -uAGCGCGCCGuccgcGGCGuCGGCgcgcgcguagcgcaGGCAGa -3'
miRNA:   3'- auUUGCGCGGCuc---UCGU-GCCG--------------UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 79603 0.66 0.821088
Target:  5'- ----gGCGCCGGGGGCGuugucgccggucgccCcGCGGCGGg -3'
miRNA:   3'- auuugCGCGGCUCUCGU---------------GcCGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.