miRNA display CGI


Results 1 - 20 of 695 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 5' -57.1 NC_001847.1 + 425 0.69 0.661505
Target:  5'- gGGGCGgGCgGGcGGCgGCGGCGGCGGc -3'
miRNA:   3'- aUUUGCgCGgCUcUCG-UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 461 0.67 0.75254
Target:  5'- -cGGCgGCGgCGGcGGCgGCGGCAGCAGc -3'
miRNA:   3'- auUUG-CGCgGCUcUCG-UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 543 0.69 0.639733
Target:  5'- cUAGAUGCGCucucCGGGGGCACgauugaccugccuGGCGGCGa -3'
miRNA:   3'- -AUUUGCGCG----GCUCUCGUG-------------CCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 961 0.68 0.708705
Target:  5'- -cGACuGCGCCGgcacccgggccggcGGGGCuuccgccGCGGCGGCGGc -3'
miRNA:   3'- auUUG-CGCGGC--------------UCUCG-------UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 1034 0.7 0.578657
Target:  5'- -cGGCGCGCCGcAGcAGCACGaGCGucucccGCGGg -3'
miRNA:   3'- auUUGCGCGGC-UC-UCGUGC-CGU------CGUC- -5'
6499 5' -57.1 NC_001847.1 + 1151 0.67 0.742733
Target:  5'- -cGGCGCGCgGcuccGGcAGCGCGGCcgcGCAGa -3'
miRNA:   3'- auUUGCGCGgC----UC-UCGUGCCGu--CGUC- -5'
6499 5' -57.1 NC_001847.1 + 1263 0.77 0.246232
Target:  5'- -cGGCGCGCCGAGcccccagcgguuggcGGCGCGGUGGCuGg -3'
miRNA:   3'- auUUGCGCGGCUC---------------UCGUGCCGUCGuC- -5'
6499 5' -57.1 NC_001847.1 + 1392 0.7 0.558189
Target:  5'- --cACGCGCUGccGGuacucGCGCGGCGGCAc -3'
miRNA:   3'- auuUGCGCGGC--UCu----CGUGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 1558 0.74 0.371567
Target:  5'- aAGACGCGCCgcGAGgccAGCACGGCGcGCGc -3'
miRNA:   3'- aUUUGCGCGG--CUC---UCGUGCCGU-CGUc -5'
6499 5' -57.1 NC_001847.1 + 1590 0.69 0.67184
Target:  5'- -cAGCGCGCCGcucGGGCcaGCGcGCGGCGc -3'
miRNA:   3'- auUUGCGCGGCu--CUCG--UGC-CGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 1621 0.66 0.817599
Target:  5'- ---cUGCGCCGcGGcAGCaccGCGGCGcGCAGg -3'
miRNA:   3'- auuuGCGCGGC-UC-UCG---UGCCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 1788 0.71 0.517931
Target:  5'- ---cCGCGUCGAGAGCA--GCAGCAc -3'
miRNA:   3'- auuuGCGCGGCUCUCGUgcCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 1907 0.75 0.331947
Target:  5'- cGAGCGCGUgCGAGAGCccgccgcggcGCGGCGGCc- -3'
miRNA:   3'- aUUUGCGCG-GCUCUCG----------UGCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 1970 0.7 0.558189
Target:  5'- cGGGCgGCGCCGccAGCGCcuccccGGCAGCGGg -3'
miRNA:   3'- aUUUG-CGCGGCucUCGUG------CCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 2060 0.67 0.75254
Target:  5'- --cACGCGCCGcc-GCAgCGGUGGCGGn -3'
miRNA:   3'- auuUGCGCGGCucuCGU-GCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 2084 0.75 0.331947
Target:  5'- cGAGCGCcCCGcGGGGCccgcGCGGCGGCGGg -3'
miRNA:   3'- aUUUGCGcGGC-UCUCG----UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 2191 0.71 0.54803
Target:  5'- cGAGcCGCGCCGcGAccucgGgGCGGCAGUAGg -3'
miRNA:   3'- aUUU-GCGCGGCuCU-----CgUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 2273 0.66 0.808754
Target:  5'- --cACGCGgCGGaAGCcgccguCGGCGGCGGg -3'
miRNA:   3'- auuUGCGCgGCUcUCGu-----GCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 2354 0.68 0.681114
Target:  5'- ---cCGCGCCGGcccGGCcgcgucgGCGGCGGCGGc -3'
miRNA:   3'- auuuGCGCGGCUc--UCG-------UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 2896 0.66 0.83476
Target:  5'- --cGCGCGUCGAGuaccGCGCGaGCGGgGc -3'
miRNA:   3'- auuUGCGCGGCUCu---CGUGC-CGUCgUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.